RNA id: TCONS_00049612


Basic Information

Item Value
RNA id TCONS_00049612
length 1305
RNA type mRNA
GC content 0.43
exon number 2
gene id XLOC_025082
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 9071806 ~ 9091825 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

agagacaagaattgtttcacctgcactcagtgtggaaagattttggcaagcaaaagcaaacttaagattcacatgataatccacactggagagaaaccattcacatgcactcagtgtgggaagagtttccgccaagcatcatcacttaataaacacatgaggatccacactggagagaaaccattcacatgcactcatttcagccaatcatcaaactttaatctacacatgaggatccacactggagagaaaccatttacgtgcactcagtgtgggaagagtttccgccaagcatcatcacttaataaacacatgaggacccacactggagagaaaccatttacttgcactcagtgtgggaagagtttcaaccgctcatcacaccttaatcaagacaaaaggatccacactggagagaaaccaataacgtgcactcagtgtgggaagagttttcgccaatcatcatccctttatagacacatgaggatccacactggagagaaaccattcacatgcactcagtgtgggaagagtttcagccaatcatcaaactttaatctacacatgaggatccacactggagagaaaccaataacgtgcactcagtgtgggaagagttttcaccaatcatcatccctttataaacacatgaggatccacactggagagaaaccattcacatgcactcagtgtgggaagagtttcagccgattatcacaccttaatcgacacatgatgatccacactggagagaaaccattcacatgcaatcagtgtgggaagagtttcagccgattaTCACACCTTATtcgacacatgatgatccacactggagagaaaccattcacatgctctcagtgtagaaagagtttcagcaTCTTATCATCGCTTTacagacacatgaggatccacactggagaaaaaccattcacatgcactcagtgtgggaaaagttttcgccaatcatcaaatcttaatctacacatgatgatccacactggagagaaaccattcaaatgcactcagtgtgggaagagtttcagccaatcatcacaccttaatcaacacatcatgatccacactggagagaaaccattcaaatgtactcagtgtgggaagagtttcatccaatcatcatcccttaatcaacacatgatgatccacactggagagaaaccattcacatgccctaagtgtgggaagagtttcaggaaATCATCgtcccttaatgaacacatgatgatccacaccggagagaaaccattaggctcgtttgaggtgcgcctcgccttgactgcattgtaa

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-071004-105 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II.

Ensembl:

ensembl_id ENSDART00000125238

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052594 lncRNA upstream 49243 9032205 ~ 9033012 (+) True XLOC_025071
TCONS_00052325 lncRNA upstream 102040 8978736 ~ 8980215 (+) True XLOC_025068
TCONS_00052324 lncRNA upstream 103566 8978232 ~ 8978689 (+) True XLOC_025067
TCONS_00052323 lncRNA upstream 206425 8874956 ~ 8875830 (+) True XLOC_025066
TCONS_00052593 lncRNA upstream 232526 8847767 ~ 8849729 (+) True XLOC_025065
TCONS_00052595 lncRNA downstream 639889 9723796 ~ 9725382 (+) True XLOC_025086
TCONS_00052596 lncRNA downstream 1095984 10179891 ~ 10231275 (+) True XLOC_025088
TCONS_00052597 lncRNA downstream 1662493 10746400 ~ 10749345 (+) True XLOC_025090
TCONS_00052598 lncRNA downstream 1849579 10933486 ~ 10938406 (+) False XLOC_025091
TCONS_00052599 lncRNA downstream 1852282 10936189 ~ 10938406 (+) True XLOC_025091
TCONS_00049597 mRNA upstream 245533 8827013 ~ 8836722 (+) True XLOC_025064
TCONS_00049595 mRNA upstream 245911 8825382 ~ 8836344 (+) False XLOC_025064
TCONS_00049596 mRNA upstream 250973 8826905 ~ 8831282 (+) False XLOC_025064
TCONS_00049592 mRNA upstream 785005 8290595 ~ 8297250 (+) False XLOC_025060
TCONS_00049616 mRNA downstream 249077 9332984 ~ 9342773 (+) False XLOC_025083
TCONS_00049615 mRNA downstream 249077 9332984 ~ 9342773 (+) True XLOC_025083
TCONS_00049617 mRNA downstream 295970 9379877 ~ 9422448 (+) True XLOC_025084
TCONS_00049618 mRNA downstream 504798 9588705 ~ 9626674 (+) False XLOC_025085
TCONS_00049619 mRNA downstream 504821 9588728 ~ 9625904 (+) True XLOC_025085
TCONS_00049609 other upstream 40160 9041989 ~ 9042095 (+) True XLOC_025081
TCONS_00049608 other upstream 40687 9041462 ~ 9041568 (+) True XLOC_025080
TCONS_00049607 other upstream 41202 9040947 ~ 9041053 (+) True XLOC_025079
TCONS_00049606 other upstream 41732 9040417 ~ 9040523 (+) True XLOC_025078
TCONS_00049605 other upstream 42262 9039887 ~ 9039993 (+) True XLOC_025077
TCONS_00049621 other downstream 1068231 10152138 ~ 10163561 (+) True XLOC_025087
TCONS_00049628 other downstream 2859642 11943549 ~ 11946957 (+) True XLOC_025104
TCONS_00049660 other downstream 4322319 13406226 ~ 13406323 (+) True XLOC_025130
TCONS_00049661 other downstream 4322544 13406451 ~ 13406538 (+) False XLOC_025131
TCONS_00049675 other downstream 4764319 13848226 ~ 13857716 (+) False XLOC_025143

Expression Profile

//