RNA id: TU1845460



Basic Information


Item Value
RNA id TU1845460
length 363
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G1612367
representative True

Chromosome Information


Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 30757063 ~ 30757425 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


taagtattcagacccttttctatgagactcgaaattgagctcaggtgcatcctgtttccattgatcattcttgatgtttctacaacttgattggagcccacctgtggtatattcaattgattggacatgatttggaaagggacacactatataaggtcacacagctgacattgcatgtcagacaaaaaaccaagccatgaggttgaaagaaTTGGATTGGATCCAAGAcagtattgtgtcgaggcaaagatctggggaagggtacaaacatttttatgcagcattgaaggtccccaagaacacagtggcctccatcattcttaaatggaagaagtttggaaccaccaagactcttcctagagc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1845442 lncRNA downstream 10658 30746204 ~ 30746405 (-) True G1612349
TU1845429 lncRNA downstream 17396 30739412 ~ 30739667 (-) True G1612336
TU1845402 lncRNA downstream 38449 30718366 ~ 30718614 (-) True G1612309
TU1845393 lncRNA downstream 42635 30714193 ~ 30714428 (-) True G1612300
TU1845372 lncRNA downstream 62031 30692725 ~ 30695032 (-) True G1612280
TU1845736 lncRNA upstream 87839 30845264 ~ 30892092 (-) True G1612631
TU1845771 lncRNA upstream 151002 30908427 ~ 30908778 (-) True G1612665
TU1845773 lncRNA upstream 153968 30911393 ~ 30947794 (-) True si:dkey-288a3.2
TU1845912 lncRNA upstream 352888 31110313 ~ 31110609 (-) True G1612802
TU1845923 lncRNA upstream 364203 31121628 ~ 31121837 (-) True G1612813
XM_021574959.2 mRNA downstream 1027810 29717062 ~ 29729253 (-) True LOC110498326
XR_002469847.2 mRNA downstream 1544956 29208824 ~ 29212107 (-) True LOC110498568
XM_036954609.1 mRNA downstream 1666574 29008815 ~ 29090489 (-) False LOC110497635
XM_021573872.2 mRNA downstream 1799333 28935079 ~ 28957730 (-) True LOC110497632
XM_021573871.2 mRNA downstream 1803164 28935079 ~ 28953899 (-) False LOC110497632
XM_036954637.1 mRNA upstream 190028 30947453 ~ 30988951 (-) False si:dkey-288a3.2
XM_036954638.1 mRNA upstream 190028 30947453 ~ 30988951 (-) False si:dkey-288a3.2
XM_036954639.1 mRNA upstream 211450 30968875 ~ 30988951 (-) False si:dkey-288a3.2
XM_036954642.1 mRNA upstream 809928 31567353 ~ 31629052 (-) False bcl11ba
XM_036954641.1 mRNA upstream 809928 31567353 ~ 31629055 (-) False bcl11ba
TU1844494 other downstream 721381 30034918 ~ 30035682 (-) True G1611431
TU1844446 other downstream 801277 29947400 ~ 29955786 (-) False G1611392
TU1844398 other downstream 870373 29886345 ~ 29886690 (-) True G1611350
TU1843130 other downstream 1966650 28789421 ~ 28790413 (-) True G1610194
TU1843094 other downstream 2025517 28724255 ~ 28731546 (-) True mideasb
TU1846340 other upstream 705696 31463121 ~ 31463896 (-) True G1613218
TU1846906 other upstream 962497 31719922 ~ 31807247 (-) True G1613722
TU1847001 other upstream 1258775 32016200 ~ 32062494 (-) True fbxo34
TU1848607 other upstream 1701105 32458530 ~ 32461579 (-) True G1615240
TU1848746 other upstream 1893501 32650926 ~ 32657769 (-) True G1615357

Expression Profile