RNA id: TU1846340


Basic Information

Item Value
RNA id TU1846340
length 776
RNA type TUCP
GC content 0.46
exon number 1
gene id G1613218
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 31463121 ~ 31463896 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcttcatggttaacgagacgtggtgtggtcacaacaacatacaggaactcaagtccttctgttcacctaatttagaattcctcacaatcaaatgtcgaccgcattatctaccaagggaattctcttcgattataatcacagccgtatatattcccccccaagcagacacatcgatggctctgaacaaactttatttgactctttgcaaactggaatccatatatcctgaggctgcattcattgtagctggggattttaacaaggctaatctgaaaacaagactccctaaattgtatcagcatatcgattgcgcaaccagggctggaaaaaccttggatcattgctattctaacttccgcgacgcatataaggccctgccccgctctcctttcggaaaagctgaccacgactccattttgttgatccctgcctacagacagaaactaaaacaagaagctcccgcgctgaggtctgttcaacgctggtccgaccaatctgattccacactccaagactgcttccatcacgtggactgggatatgtttcgtattgcatcaaacaacaacattgacgaatacgctgattcggtgagcgagttcattagaacgtgcgttgaagatgtcgttcccatagcaacgattaaaacattcccaaaccagaaaccgtggattgatggcagcattcgcgtgaaactgaaagcgcgaaccactgcttttaatcagggcaaggtgaccggaaacatgaccgaatacaaacagtgtagctattccctccgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1846329 lncRNA downstream 4192 31458538 ~ 31458929 (-) True G1613207
TU1846095 lncRNA downstream 213026 31249883 ~ 31250095 (-) True G1612980
TU1846092 lncRNA downstream 216260 31246644 ~ 31246861 (-) True G1612977
TU1845952 lncRNA downstream 319687 31143140 ~ 31143434 (-) True G1612842
TU1845951 lncRNA downstream 320000 31142839 ~ 31143121 (-) True G1612841
TU1846363 lncRNA upstream 17750 31481646 ~ 31481855 (-) True G1613241
TU1846761 lncRNA upstream 37448 31501344 ~ 31501556 (-) True G1613602
TU1846762 lncRNA upstream 39760 31503656 ~ 31503872 (-) True G1613603
TU1846763 lncRNA upstream 40282 31504178 ~ 31504459 (-) True G1613604
TU1846765 lncRNA upstream 45296 31509192 ~ 31509404 (-) True G1613606
XM_036954637.1 mRNA downstream 474170 30947453 ~ 30988951 (-) False si:dkey-288a3.2
XM_036954638.1 mRNA downstream 474170 30947453 ~ 30988951 (-) False si:dkey-288a3.2
XM_036954639.1 mRNA downstream 474170 30968875 ~ 30988951 (-) False si:dkey-288a3.2
XM_021574959.2 mRNA downstream 1733868 29717062 ~ 29729253 (-) True LOC110498326
XR_002469847.2 mRNA downstream 2251014 29208824 ~ 29212107 (-) True LOC110498568
XM_036954642.1 mRNA upstream 103457 31567353 ~ 31629052 (-) False bcl11ba
XM_036954641.1 mRNA upstream 103457 31567353 ~ 31629055 (-) False bcl11ba
XM_036954640.1 mRNA upstream 107581 31571477 ~ 31629054 (-) True bcl11ba
XM_021573910.2 mRNA upstream 189766 31653662 ~ 31716420 (-) False setd3
XM_021573911.2 mRNA upstream 189766 31653662 ~ 31717551 (-) False setd3
TU1844494 other downstream 1427439 30034918 ~ 30035682 (-) True G1611431
TU1844446 other downstream 1507335 29947400 ~ 29955786 (-) False G1611392
TU1844398 other downstream 1576431 29886345 ~ 29886690 (-) True G1611350
TU1843130 other downstream 2672708 28789421 ~ 28790413 (-) True G1610194
TU1843094 other downstream 2731575 28724255 ~ 28731546 (-) True mideasb
TU1846906 other upstream 256026 31719922 ~ 31807247 (-) True G1613722
TU1847001 other upstream 552304 32016200 ~ 32062494 (-) True fbxo34
TU1848607 other upstream 994634 32458530 ~ 32461579 (-) True G1615240
TU1848746 other upstream 1187030 32650926 ~ 32657769 (-) True G1615357
TU1848792 other upstream 1308021 32771917 ~ 32775704 (-) True LOC110497688

Expression Profile