RNA id: TCONS_00052595


Basic Information

Item Value
RNA id TCONS_00052595
length 511
lncRNA type inter_gene
GC content 0.32
exon number 2
gene id XLOC_025086
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 9723796 ~ 9725382 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTCCCTTTTCATCCATTAGCTCTGATGTAACAGTATGGCACATGCAtctgtataaataatacaaaaattatgTCAACACAGAGAGTAATGCATATGTACAAACAAGAGAAACTTTGTACAGATGAATACAGATTGAGTAAATGGGGGTACATTTCAAGAAAtcataaaaagaaaaatcatacATTCTTGAATTAATAAACACACCCCAGATAGCACACGTACATTTGTAAGACATATTTTGAAGATCGTTTGGTCTGGACAAACATCTGATACATGTCATTAAAATGTCTATTTAACAAACATTCTCAATCATAAACATCTTAAAGAGATTTTCAACTCATCTATTCAACATCTAAGAGGAGACATCCAGAAGACATACCACAGATGTAATAAATACGTCTTCCAGACGTAAACGCACACAACAATAAGATGTCTCTGTAATGAACTGTATGTACAAAGATCAGATAAATGCCAATGAAAGTTTTTTAACAATCATTCCCAATCATCATCT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052594 lncRNA upstream 690784 9032205 ~ 9033012 (+) True XLOC_025071
TCONS_00052325 lncRNA upstream 743581 8978736 ~ 8980215 (+) True XLOC_025068
TCONS_00052324 lncRNA upstream 745107 8978232 ~ 8978689 (+) True XLOC_025067
TCONS_00052323 lncRNA upstream 847966 8874956 ~ 8875830 (+) True XLOC_025066
TCONS_00052593 lncRNA upstream 874067 8847767 ~ 8849729 (+) True XLOC_025065
TCONS_00052596 lncRNA downstream 454509 10179891 ~ 10231275 (+) True XLOC_025088
TCONS_00052597 lncRNA downstream 1021018 10746400 ~ 10749345 (+) True XLOC_025090
TCONS_00052598 lncRNA downstream 1208104 10933486 ~ 10938406 (+) False XLOC_025091
TCONS_00052599 lncRNA downstream 1210807 10936189 ~ 10938406 (+) True XLOC_025091
TCONS_00052600 lncRNA downstream 1217745 10943127 ~ 10993976 (+) False XLOC_025092
TCONS_00049618 mRNA upstream 97122 9588705 ~ 9626674 (+) False XLOC_025085
TCONS_00049619 mRNA upstream 97892 9588728 ~ 9625904 (+) True XLOC_025085
TCONS_00049617 mRNA upstream 301348 9379877 ~ 9422448 (+) True XLOC_025084
TCONS_00049616 mRNA upstream 381023 9332984 ~ 9342773 (+) False XLOC_025083
TCONS_00049615 mRNA upstream 381023 9332984 ~ 9342773 (+) True XLOC_025083
TCONS_00049620 mRNA downstream 426710 10152092 ~ 10164759 (+) False XLOC_025087
TCONS_00049622 mRNA downstream 911948 10637330 ~ 10641880 (+) True XLOC_025089
TCONS_00049623 mRNA downstream 1347576 11072958 ~ 11075476 (+) True XLOC_025095
TCONS_00049624 mRNA downstream 1376203 11101585 ~ 11122914 (+) True XLOC_025096
TCONS_00049625 mRNA downstream 1823134 11548516 ~ 11576337 (+) True XLOC_025100
TCONS_00049609 other upstream 681701 9041989 ~ 9042095 (+) True XLOC_025081
TCONS_00049608 other upstream 682228 9041462 ~ 9041568 (+) True XLOC_025080
TCONS_00049607 other upstream 682743 9040947 ~ 9041053 (+) True XLOC_025079
TCONS_00049606 other upstream 683273 9040417 ~ 9040523 (+) True XLOC_025078
TCONS_00049605 other upstream 683803 9039887 ~ 9039993 (+) True XLOC_025077
TCONS_00049621 other downstream 426756 10152138 ~ 10163561 (+) True XLOC_025087
TCONS_00049628 other downstream 2218167 11943549 ~ 11946957 (+) True XLOC_025104
TCONS_00049660 other downstream 3680844 13406226 ~ 13406323 (+) True XLOC_025130
TCONS_00049661 other downstream 3681069 13406451 ~ 13406538 (+) False XLOC_025131
TCONS_00049675 other downstream 4122844 13848226 ~ 13857716 (+) False XLOC_025143