RNA id: TCONS_00052597


Basic Information

Item Value
RNA id TCONS_00052597
length 1854
lncRNA type read_through
GC content 0.40
exon number 2
gene id XLOC_025090
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 10746400 ~ 10749345 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGAGTCCTATCAACTGCAACAAATGAGTGAAACTCTTTAGATGCTGATCACGGTTTCTCtcgtgtgaatcctctcatgttttTTTCCGGATATGTAGCTGATTGAACACTTGAaaagtttctctccagtgtgaatcttctGATGTTTTCTTAAACTTAACCGTGTTGAAAAACTTTTTCCACACACAGGACATGAataaggcttctcctttgtatgaGCTCTAAGATGGATCTTCAGATTTGTGGctcttaaaaatgttttgctgcattgatcacatttgtgtgatttttctccagtgtggatcaacatgtgtttattaaggcTTGATGACCCTCtgaaattcttcccacactgagaacatgtgtacggtttctctccagtgtgaatctgcTCATGTTTTTTAAGATTTCCTAactgactgaatctcttgtcgcagtgtgaacacttgtaaggtttctctccagtgtgaatcctctggtgcagTTTCAAATGTTGAGcactaataaaagtcttctcacactcaaagcacatatactctttcacaccagtgtgaatCTTCTGATGTACTCTTAAATATGACTGCCTtgaaaaactctttccacacacagAACATGAATAAGGCTTCTCCTTCGTATGAACTCTAAGATGGATCTTCAGATATACAGGTTTCAAAAATGATTTAccgcattgatcacatttgtgtgttttctttccagtgtggatcaacATGTGTTGATGAAGGCTTGATGAGTATccgaaactcctcccacactgagtacatgtgtacggtttctctccagtgtgaataaTCATGTGTTGAGTAAGGGATGATGATtgtgtgaagctctttccacactgagtacatgtgtacggtttctctccagtgtgaatcctctgatgGACCTTCAGATCTGCAGCTGTCAAAAATGGTTTAccgcattgatcacatttgtgtgttttctctccactgtggagcttcatgtgttgattaagacTTGATAATCCTCtgaaattcttcccacactgagtacatgtgtatggtttctctccagtgtgaatcctcttatGTAAATTCAAGTTTCCTAGCCGattgaatctcttgtcgcagtgtgaacacttgtagggcttctctccagtgtgaatcctctcatgtacTTTCAGAGTTGATAactgactgaatctcttgtcacagtgtgaacaattgaacggtttctctccagtgtgaatcctctcatgtattTTCAGGACTGATAAatgactgaatctcttgtcgcagtgtgaacacttgtaaggtttctctccggtgtgaatcctctcatgtcttTTCAGAATTGATAactgactgaatctcttgtcgcagtgtgaacacttgtaaggtttctctccagtgtgaatcctctcatgtgtttccAGGCATCTTACATAAcagaatctcttgtcgcagtgtgaacacttgtaaggtttctctccagtgtgaatgcTCTCATGTCTTTTCAGAATTGATAACTGAcagaatctcttgtcgcagtgtgaacactggtaaggtttctctccagtgtgtacaGTCTGGTGCCTTTTCAAATGATCAGCTCTAGTAAAAGTCTTCTCACAATCCAAGCACATATACTTTTTCTCACCACTGTGGATCTTCTTATGTTTTACTAAACTTGACTGCATTTCAAAACTTATTTCACACACAGAACATGAAAGAGGCTTCTCTTTTGTATGAGCCCTAAGATGTGTCTTCAGCTGTAAAgccctcaaaaatgttttgccacattgatcacgtgtgtgtgttttatctccACTGTGGATCTGAGGatccaaaactcttcccacactgagtatgtgtac

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052596 lncRNA upstream 515125 10179891 ~ 10231275 (+) True XLOC_025088
TCONS_00052595 lncRNA upstream 1021018 9723796 ~ 9725382 (+) True XLOC_025086
TCONS_00052594 lncRNA upstream 1713388 9032205 ~ 9033012 (+) True XLOC_025071
TCONS_00052325 lncRNA upstream 1766185 8978736 ~ 8980215 (+) True XLOC_025068
TCONS_00052324 lncRNA upstream 1767711 8978232 ~ 8978689 (+) True XLOC_025067
TCONS_00052598 lncRNA downstream 184141 10933486 ~ 10938406 (+) False XLOC_025091
TCONS_00052599 lncRNA downstream 186844 10936189 ~ 10938406 (+) True XLOC_025091
TCONS_00052600 lncRNA downstream 193782 10943127 ~ 10993976 (+) False XLOC_025092
TCONS_00052601 lncRNA downstream 193789 10943134 ~ 10993976 (+) False XLOC_025092
TCONS_00052602 lncRNA downstream 193808 10943153 ~ 10994605 (+) False XLOC_025092
TCONS_00049622 mRNA upstream 104520 10637330 ~ 10641880 (+) True XLOC_025089
TCONS_00049620 mRNA upstream 581641 10152092 ~ 10164759 (+) False XLOC_025087
TCONS_00049618 mRNA upstream 1119726 9588705 ~ 9626674 (+) False XLOC_025085
TCONS_00049619 mRNA upstream 1120496 9588728 ~ 9625904 (+) True XLOC_025085
TCONS_00049617 mRNA upstream 1323952 9379877 ~ 9422448 (+) True XLOC_025084
TCONS_00049623 mRNA downstream 323613 11072958 ~ 11075476 (+) True XLOC_025095
TCONS_00049624 mRNA downstream 352240 11101585 ~ 11122914 (+) True XLOC_025096
TCONS_00049625 mRNA downstream 799171 11548516 ~ 11576337 (+) True XLOC_025100
TCONS_00049626 mRNA downstream 819178 11568523 ~ 11587609 (+) True XLOC_025101
TCONS_00049627 mRNA downstream 1176685 11926030 ~ 11947672 (+) False XLOC_025104
TCONS_00049621 other upstream 582839 10152138 ~ 10163561 (+) True XLOC_025087
TCONS_00049609 other upstream 1704305 9041989 ~ 9042095 (+) True XLOC_025081
TCONS_00049608 other upstream 1704832 9041462 ~ 9041568 (+) True XLOC_025080
TCONS_00049607 other upstream 1705347 9040947 ~ 9041053 (+) True XLOC_025079
TCONS_00049606 other upstream 1705877 9040417 ~ 9040523 (+) True XLOC_025078
TCONS_00049628 other downstream 1194204 11943549 ~ 11946957 (+) True XLOC_025104
TCONS_00049660 other downstream 2656881 13406226 ~ 13406323 (+) True XLOC_025130
TCONS_00049661 other downstream 2657106 13406451 ~ 13406538 (+) False XLOC_025131
TCONS_00049675 other downstream 3098881 13848226 ~ 13857716 (+) False XLOC_025143
TCONS_00049684 other downstream 3495321 14244666 ~ 14244784 (+) True XLOC_025148

Expression Profile

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