RNA id: TCONS_00052599


Basic Information

Item Value
RNA id TCONS_00052599
length 2218
lncRNA type intronic
GC content 0.37
exon number 1
gene id XLOC_025091
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 10933486 ~ 10938406 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gagttttttttaattatgcataaCAGTAATACAATAAGTAAATACAATCTGaattatacaaataatttaaaaaaatagtctTTGTCTCTTTCTGATCCAATAGCTTGAGTACATTTTTGCcccagccatatcaccctgcagcccaagaccggttactcacgaaagctaagcagggctgagcctggtcagtacctgaatgggagaccatgtgggaaaactaggttgttgttggaagtggtgttagtgaggccaacagggggcgctcaacctgtggtctatgtgagtcctaatgccccagtaaaagtgaaggggacactacactgtcagtgggcgccgtcttttggatgagacgttaaaccgaggtcctgactctctgtggtcattaaaaatcccatggcatttctcgtgaaagagcaggggtgtaaccccagtgtccaaAGTCCCTCAAACGGCCCttgcgatcatggcctcccaatcatccccagccaccgaattggctctatcactgtctctccactcccctaatagctggtgtgtggtgagcgcactggcgccgttgtcctgtggctgccattgcatcatccaagtggatgctgcacactggtggtggtgtggagagaccccctcatgattgtgaagcgctttgggtgtatggccatatggccacaatgcgctatataaatacacattacatttttatCAGGTATAAATGACAATCTGAAATCACATTACTTTTACAAAAAGTTTCCCCTTCCTTCTCTTATTATTCCAATCTCTTATTAAGTTAAAATAGTCGTAAGCAAAAATATGAAATACACAATTACTTTGTCTTTAAACAACCTGCCCTTTTGtttcacttttttgtttttttgtggccGATGCCATTTTGGCTCTAACTCAGATACACTTGTCAGAGTTTTTAGAGTGCTGTCAAGCCAGCCACACTCCAAAACAAACACAATCAAGCCAGCcatgatttgtactgtatttatatgTACACGTATTACTATGATTACGGTAAGTTCAGGAACAACACAGCAACTCTTTAAGATTTTCAGATTATCTATTGTAATTTAATGTTATATATTGCGCGCTGCAGAGCAATGTCAGTATTGTTGTTTGCATAACATGATTTAACATGataaaaaatgtacaatgttttcaGATTGTTTTGACTTTAAATATTGTCAATGTAACTGTCCCTGccacattttacaaaatataattatttttaaaataaacacatcaggggtctccacagtggaatgaatggGTAATTACTTTgacatatgttttttgcagcagatgcccttcagcaATATCAAACTAGCAGTGTTCAAAAACAAAGGACAATGTGAACAAGCATGCGACCCATACACTTTTTATATAAGTGCTGATTTGACAATCCTGCAATGGTTTCTTTTAACCAGCACAAACTTATTTCAACCATTGAACATATTTTACGTAGCAACATATTCAGTCAAAGGTGTTAAACTGGGTGTAATTAATATGTGATCAGCTCAAAGAGAAAATAACATTAGTAACGAATGTACATACCATCAGATATAATTGGAAAAACAGCCATAATCAAAAAAATAAGACTCTCCATGCTCAGCTGAAGTCATGATCACGTCTCTATGCTGTCTAAGGGAAAATCTGTAAATGATCTGGTCATGAAAACATTGTGTtaatttgctttcattttcaacGAAGAGTTCATTGCTACAAATCCAGACTAACCAGTTTTGGCTAAACTGAAAAACTTTACTATTAAGGAATAAAACCACCTGCAATACGTCTGAAAGTGCATATCATCAAGGGTTCGACACCAAATGAAAACAGTTTGAAGGATTTAATGGCAAATTGTAGCTTGTTTATCCATAACAAAAGATCTAGAATAAAAACTGCTGGAAAACTTTTGAGGTTTTACAGTTTCTGTTATTTGAGTGTTTCCTCATTGTTCTAAAGCTTGTTTTTCCGCGTGTCTCTCAATGAACACAcctacaaaaacatttaaaacttgaaATGTGTGTGCTTAAAATATATGTTAGCTCAGAACTTCAGTACTGAGGTTACTTGGCCTAATTGTCACTTTTTACTTAAATACTTATTTGGGTTTATCTTTAAACTGATTCTAACCCACTTGAAAAAATaccagtaatttatagtaaatactagtgtttttttaACTTACAATAGTAATAtacttaatctgttg

Function

GO:

id name namespace
GO:0015711 organic anion transport biological_process
GO:0006820 anion transport biological_process
GO:0022804 active transmembrane transporter activity molecular_function
GO:0015349 thyroid hormone transmembrane transporter activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052597 lncRNA upstream 186844 10746400 ~ 10749345 (+) True XLOC_025090
TCONS_00052596 lncRNA upstream 704914 10179891 ~ 10231275 (+) True XLOC_025088
TCONS_00052595 lncRNA upstream 1210807 9723796 ~ 9725382 (+) True XLOC_025086
TCONS_00052594 lncRNA upstream 1903177 9032205 ~ 9033012 (+) True XLOC_025071
TCONS_00052325 lncRNA upstream 1955974 8978736 ~ 8980215 (+) True XLOC_025068
TCONS_00052600 lncRNA downstream 4721 10943127 ~ 10993976 (+) False XLOC_025092
TCONS_00052601 lncRNA downstream 4728 10943134 ~ 10993976 (+) False XLOC_025092
TCONS_00052602 lncRNA downstream 4747 10943153 ~ 10994605 (+) False XLOC_025092
TCONS_00052603 lncRNA downstream 4772 10943178 ~ 10993976 (+) False XLOC_025092
TCONS_00052604 lncRNA downstream 5651 10944057 ~ 10993976 (+) True XLOC_025092
TCONS_00049622 mRNA upstream 294309 10637330 ~ 10641880 (+) True XLOC_025089
TCONS_00049620 mRNA upstream 771430 10152092 ~ 10164759 (+) False XLOC_025087
TCONS_00049618 mRNA upstream 1309515 9588705 ~ 9626674 (+) False XLOC_025085
TCONS_00049619 mRNA upstream 1310285 9588728 ~ 9625904 (+) True XLOC_025085
TCONS_00049617 mRNA upstream 1513741 9379877 ~ 9422448 (+) True XLOC_025084
TCONS_00049623 mRNA downstream 134552 11072958 ~ 11075476 (+) True XLOC_025095
TCONS_00049624 mRNA downstream 163179 11101585 ~ 11122914 (+) True XLOC_025096
TCONS_00049625 mRNA downstream 610110 11548516 ~ 11576337 (+) True XLOC_025100
TCONS_00049626 mRNA downstream 630117 11568523 ~ 11587609 (+) True XLOC_025101
TCONS_00049627 mRNA downstream 987624 11926030 ~ 11947672 (+) False XLOC_025104
TCONS_00049621 other upstream 772628 10152138 ~ 10163561 (+) True XLOC_025087
TCONS_00049609 other upstream 1894094 9041989 ~ 9042095 (+) True XLOC_025081
TCONS_00049608 other upstream 1894621 9041462 ~ 9041568 (+) True XLOC_025080
TCONS_00049607 other upstream 1895136 9040947 ~ 9041053 (+) True XLOC_025079
TCONS_00049606 other upstream 1895666 9040417 ~ 9040523 (+) True XLOC_025078
TCONS_00049628 other downstream 1005143 11943549 ~ 11946957 (+) True XLOC_025104
TCONS_00049660 other downstream 2467820 13406226 ~ 13406323 (+) True XLOC_025130
TCONS_00049661 other downstream 2468045 13406451 ~ 13406538 (+) False XLOC_025131
TCONS_00049675 other downstream 2909820 13848226 ~ 13857716 (+) False XLOC_025143
TCONS_00049684 other downstream 3306260 14244666 ~ 14244784 (+) True XLOC_025148

Expression Profile

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