RNA id: TCONS_00052600


Basic Information

Item Value
RNA id TCONS_00052600
length 980
lncRNA type read_through
GC content 0.31
exon number 2
gene id XLOC_025092
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 10943127 ~ 10994605 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ctttattttcttatttaaagtctTCATTTCTATACAGTCAACATACTGAACTGCACTTACATGAACTTAGtcaaaacactttacaaaaccgatgcttatttgaaatattatacaCATATACTGCTGTTGCACAGATTTACATTTGGCAGTCAGTTCTGATAAACTTCACCGTCATCATCAGAATCAGACAAACATAAACAATGCCTGATTTTGATGCAATATCCACAAATACttataaaacacatttcaaaatattttcaaaaatatttattcattatctaATAAACTCAAAGATGAATACATCACCATTtacataaaactgtaaataacAGACAGTACAGGaacaatcattttaaataaacaaagcaattaGTTCTGCTTTATATACCAATAaagaaatcaaaataaacaatacagtTTGATCAGGTCTGGcgtgagagcaaaaaaaaaaaaatctgagagaGAGTTGACGTACTCTTGAAGACAGGAGTTGATCAGATCCTGAGACAgtgttaattttaattattatagacAAAAATTACTGCATAGACAACAATAATCTGCCACAGTCAAAATCTTTAACTTTTCCATCATTTAACAGAACAGAAAACCCGATGGACAAATATTCAATCAAAATTACACAAacatgtgtaaacataaacataaacataaacatgaaCAAAATAGTTACTGACCAATGCTGTAGAGGTCTCAAACATGGACAAAAAGATCCCTCATTTTATCTAATACAcagttaaaaatgaataaattgacagaaacagttttaaaaatgtaccaCAATTGATTTATATGTTAATCTGGAGAAGCAGAATCAAGTGCAGACAGAAACTCCATTTCATAATTCGGTTGTTCTCTgtgtacaaaacaaaacattgttattatGTCATCAGCACATCTGTACTCACATCACTCCACACTAAGATGACAAACCCTTACTGCATACTGCAGATCAGCTGATA

Function

GO:

id name namespace
GO:0022402 cell cycle process biological_process
GO:0072698 protein localization to microtubule cytoskeleton biological_process
GO:0007049 cell cycle biological_process
GO:0044380 protein localization to cytoskeleton biological_process
GO:0072686 mitotic spindle cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:0044430 obsolete cytoskeletal part cellular_component
GO:0005813 centrosome cellular_component
GO:0005814 centriole cellular_component
GO:0005815 microtubule organizing center cellular_component
GO:0005819 spindle cellular_component
GO:0015630 microtubule cytoskeleton cellular_component
GO:0005622 intracellular anatomical structure cellular_component

KEGG:

id description
ko03050 Proteasome
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052598 lncRNA upstream 4721 10933486 ~ 10938406 (+) False XLOC_025091
TCONS_00052599 lncRNA upstream 4721 10936189 ~ 10938406 (+) True XLOC_025091
TCONS_00052597 lncRNA upstream 193782 10746400 ~ 10749345 (+) True XLOC_025090
TCONS_00052596 lncRNA upstream 711852 10179891 ~ 10231275 (+) True XLOC_025088
TCONS_00052595 lncRNA upstream 1217745 9723796 ~ 9725382 (+) True XLOC_025086
TCONS_00052607 lncRNA downstream 194447 11188423 ~ 11198265 (+) True XLOC_025097
TCONS_00052326 lncRNA downstream 332186 11326162 ~ 11327615 (+) False XLOC_025098
TCONS_00052327 lncRNA downstream 332186 11326162 ~ 11333666 (+) True XLOC_025098
TCONS_00052608 lncRNA downstream 392962 11386938 ~ 11388541 (+) True XLOC_025099
TCONS_00052609 lncRNA downstream 582699 11576675 ~ 11580720 (+) True XLOC_025102
TCONS_00049622 mRNA upstream 301247 10637330 ~ 10641880 (+) True XLOC_025089
TCONS_00049620 mRNA upstream 778368 10152092 ~ 10164759 (+) False XLOC_025087
TCONS_00049618 mRNA upstream 1316453 9588705 ~ 9626674 (+) False XLOC_025085
TCONS_00049619 mRNA upstream 1317223 9588728 ~ 9625904 (+) True XLOC_025085
TCONS_00049617 mRNA upstream 1520679 9379877 ~ 9422448 (+) True XLOC_025084
TCONS_00049623 mRNA downstream 78982 11072958 ~ 11075476 (+) True XLOC_025095
TCONS_00049624 mRNA downstream 107609 11101585 ~ 11122914 (+) True XLOC_025096
TCONS_00049625 mRNA downstream 554540 11548516 ~ 11576337 (+) True XLOC_025100
TCONS_00049626 mRNA downstream 574547 11568523 ~ 11587609 (+) True XLOC_025101
TCONS_00049627 mRNA downstream 932054 11926030 ~ 11947672 (+) False XLOC_025104
TCONS_00049621 other upstream 779566 10152138 ~ 10163561 (+) True XLOC_025087
TCONS_00049609 other upstream 1901032 9041989 ~ 9042095 (+) True XLOC_025081
TCONS_00049608 other upstream 1901559 9041462 ~ 9041568 (+) True XLOC_025080
TCONS_00049607 other upstream 1902074 9040947 ~ 9041053 (+) True XLOC_025079
TCONS_00049606 other upstream 1902604 9040417 ~ 9040523 (+) True XLOC_025078
TCONS_00049628 other downstream 949573 11943549 ~ 11946957 (+) True XLOC_025104
TCONS_00049660 other downstream 2412250 13406226 ~ 13406323 (+) True XLOC_025130
TCONS_00049661 other downstream 2412475 13406451 ~ 13406538 (+) False XLOC_025131
TCONS_00049675 other downstream 2854250 13848226 ~ 13857716 (+) False XLOC_025143
TCONS_00049684 other downstream 3250690 14244666 ~ 14244784 (+) True XLOC_025148