RNA id: TCONS_00004699


Basic Information

Item Value
RNA id TCONS_00004699
length 901
lncRNA type retained_intron
GC content 0.44
exon number 3
gene id XLOC_002516
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 2759226 ~ 2788792 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCTTCAACAAAGATGGCTATCGCTACATCCTAGCAGAGCCGGATCCTCATGCTCCCGACCCGGAAAAACTGGAGCTGGACTGCTGGGCTGGAAAGCCCATTCCTGGAGACCTGTACCGGGCATGTCTGTACGAGAGAGTCCTGCTAGCATTGCATGACAGAGCTCCGCAGCTGAAGATTTCTGATGACCGGCTGACGGTGACCGGAGAGAAAGGCTACTCGATGGTGCGAGCGTCTCACGGGGTCAGAAAAGGCTCGTGGTTTTTTGAGGTGACTGTGGATGAGATGCCTCAGGACGCTGCAGCTCGACTGGGCTGGTCGCAGCCTTTAGGAAATCTGCAGGCTCCTTTGGGTTATGATAAGTTCAGCTACTCGTGGCGCAGTAAGAAAGGCACACGCTTCCATCAGTCCATTGGAAAGCATTACTCTGATGGCTACGGTCTGGGAGATATCTTGGGCTTCTTCATCGAGCTTCCAGACGAGACTGAAACCGCCAAGGCCCTGCCAGACACATACAAGGACAAAGTATTATTTTTGATTCAAATTAGTTGCATTCATTTATGTCCTAAAATCATGTAATGTTCAGGGTTCCCACTGCTTATGGACTTTCTGGAGTATAATGGAGTTTTAAAAGgtctatttcattcatttaaagtcAGGGTTTTTTTATTGATCTTTTGTCTAAGTCATGGATTTTTGTTTATTGCTTAATTTTAGTTTCCATTTAACAATATATGTATACTATTTTTGTAACcttttttcattgtttcacacctATTGTTGTTATAGCTATTTTCAACGTTATTCTATTCCTATCTTGCTTATTATTGTATGTTAAGTTAAGGATAgagtacatccaggtggttgttatcacagaataaagcccagACAGGATTATCGGC

Function

GO:

id name namespace
GO:0002244 hematopoietic progenitor cell differentiation biological_process
GO:0051568 histone H3-K4 methylation biological_process
GO:0060319 primitive erythrocyte differentiation biological_process
GO:0048188 Set1C/COMPASS complex cellular_component
GO:0042800 histone methyltransferase activity (H3-K4 specific) molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-494 Predicted to enable transcription cis-regulatory region binding activity. Acts upstream of or within hematopoietic progenitor cell differentiation and primitive erythrocyte differentiation. Predicted to be part of Set1C/COMPASS complex. Orthologous to human ASH2L (ASH2 like, histone lysine methyltransferase complex subunit).

Ensembl:

ensembl_id ENSDART00000133086

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005976 lncRNA downstream 813415 1948097 ~ 1953459 (-) True XLOC_002510
TCONS_00005973 lncRNA downstream 1025699 1678283 ~ 1741175 (-) True XLOC_002506
TCONS_00005974 lncRNA downstream 1048237 1708092 ~ 1718637 (-) False XLOC_002505
TCONS_00005972 lncRNA downstream 1048450 1669144 ~ 1718424 (-) False XLOC_002505
TCONS_00005971 lncRNA downstream 1048455 1669144 ~ 1718419 (-) False XLOC_002505
TCONS_00005977 lncRNA upstream 125942 2897979 ~ 2899304 (-) True XLOC_002518
TCONS_00005978 lncRNA upstream 550100 3322137 ~ 3326631 (-) False XLOC_002525
TCONS_00004718 lncRNA upstream 640512 3412549 ~ 3416153 (-) True XLOC_002527
TCONS_00004721 lncRNA upstream 650144 3422181 ~ 3427358 (-) True XLOC_002528
TCONS_00005979 lncRNA upstream 1182053 3954090 ~ 3956849 (-) True XLOC_002531
TCONS_00004696 mRNA downstream 53634 2695464 ~ 2713240 (-) False XLOC_002515
TCONS_00004697 mRNA downstream 53646 2696864 ~ 2713228 (-) True XLOC_002515
TCONS_00004695 mRNA downstream 84676 2680079 ~ 2682198 (-) True XLOC_002514
TCONS_00004694 mRNA downstream 163073 2573161 ~ 2603801 (-) True XLOC_002513
TCONS_00004688 mRNA downstream 239532 2499383 ~ 2527342 (-) False XLOC_002512
TCONS_00004701 mRNA upstream 1073 2773110 ~ 2788668 (-) True XLOC_002516
TCONS_00004702 mRNA upstream 84340 2856377 ~ 2875735 (-) False XLOC_002517
TCONS_00004705 mRNA upstream 152738 2924775 ~ 2942900 (-) False XLOC_002519
TCONS_00004706 mRNA upstream 152738 2924775 ~ 2943474 (-) True XLOC_002519
TCONS_00004707 mRNA upstream 171639 2943676 ~ 2960665 (-) False XLOC_002520
TCONS_00004658 other downstream 2426847 339912 ~ 340027 (-) True XLOC_002487
TCONS_00004640 other downstream 2690683 73450 ~ 76191 (-) True XLOC_002475
TCONS_00004639 other downstream 2692484 72433 ~ 74390 (-) False XLOC_002475
TCONS_00004703 other upstream 94683 2866720 ~ 2875735 (-) False XLOC_002517
TCONS_00004704 other upstream 96441 2868478 ~ 2875735 (-) True XLOC_002517
TCONS_00004722 other upstream 734503 3506540 ~ 3506654 (-) True XLOC_002529
TCONS_00004723 other upstream 996614 3768651 ~ 3768766 (-) True XLOC_002530
TCONS_00004736 other upstream 2246521 5018558 ~ 5020500 (-) False XLOC_002543

Expression Profile

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