RNA id: TCONS_00049626



Basic Information


Item Value
RNA id TCONS_00049626
length 276
RNA type mRNA
GC content 0.61
exon number 4
gene id XLOC_025101
representative True

Chromosome Information


Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 11568523 ~ 11587609 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


ctgaggccccgccctctgacgcagaaacccagacacttgtttatagctgaaacgttaaaggatgACAGATACTGGGCACGACGCAGAAAGAACAACATCGCGGCCAAGCGTTCGCGGGACGCCCGGCGGCTGAAAGAAAACCAGATCGCCATCCGTGCCGGATTCCTGGAGAAGGAGAACGCGGCGCTGCGAGCGGAGGTGGCCGACCTGCGCAAGGAACTGGGCCGCTGCAAGAACGTTCTGGCCAAATACGAGGCGCGACACGGCCCTCTGTGA

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000179668

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00052608 lncRNA upstream 179982 11386938 ~ 11388541 (+) True XLOC_025099
TCONS_00052327 lncRNA upstream 234857 11326162 ~ 11333666 (+) True XLOC_025098
TCONS_00052326 lncRNA upstream 240908 11326162 ~ 11327615 (+) False XLOC_025098
TCONS_00052607 lncRNA upstream 370258 11188423 ~ 11198265 (+) True XLOC_025097
TCONS_00052606 lncRNA upstream 511600 10991040 ~ 11056923 (+) True XLOC_025094
TCONS_00052610 lncRNA downstream 267711 11855320 ~ 11858803 (+) False XLOC_025103
TCONS_00052611 lncRNA downstream 268175 11855784 ~ 11858803 (+) True XLOC_025103
TCONS_00052612 lncRNA downstream 487279 12074888 ~ 12075135 (+) True XLOC_025105
TCONS_00052613 lncRNA downstream 489243 12076852 ~ 12081373 (+) True XLOC_025106
TCONS_00052614 lncRNA downstream 652083 12239692 ~ 12264458 (+) True XLOC_025107
TCONS_00049624 mRNA upstream 445609 11101585 ~ 11122914 (+) True XLOC_025096
TCONS_00049623 mRNA upstream 493047 11072958 ~ 11075476 (+) True XLOC_025095
TCONS_00049622 mRNA upstream 926643 10637330 ~ 10641880 (+) True XLOC_025089
TCONS_00049620 mRNA upstream 1403764 10152092 ~ 10164759 (+) False XLOC_025087
TCONS_00049619 mRNA upstream 1942619 9588728 ~ 9625904 (+) True XLOC_025085
TCONS_00049627 mRNA downstream 338421 11926030 ~ 11947672 (+) False XLOC_025104
TCONS_00049629 mRNA downstream 734561 12322170 ~ 12335913 (+) False XLOC_025108
TCONS_00049630 mRNA downstream 746900 12334509 ~ 12335927 (+) True XLOC_025108
TCONS_00049631 mRNA downstream 852490 12440099 ~ 12487576 (+) False XLOC_025109
TCONS_00049632 mRNA downstream 896399 12484008 ~ 12486130 (+) True XLOC_025109
TCONS_00049621 other upstream 1404962 10152138 ~ 10163561 (+) True XLOC_025087
TCONS_00049609 other upstream 2526428 9041989 ~ 9042095 (+) True XLOC_025081
TCONS_00049608 other upstream 2526955 9041462 ~ 9041568 (+) True XLOC_025080
TCONS_00049607 other upstream 2527470 9040947 ~ 9041053 (+) True XLOC_025079
TCONS_00049606 other upstream 2528000 9040417 ~ 9040523 (+) True XLOC_025078
TCONS_00049628 other downstream 355940 11943549 ~ 11946957 (+) True XLOC_025104
TCONS_00049660 other downstream 1818617 13406226 ~ 13406323 (+) True XLOC_025130
TCONS_00049661 other downstream 1818842 13406451 ~ 13406538 (+) False XLOC_025131
TCONS_00049675 other downstream 2260617 13848226 ~ 13857716 (+) False XLOC_025143
TCONS_00049684 other downstream 2657057 14244666 ~ 14244784 (+) True XLOC_025148

Expression Profile


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