RNA id: TCONS_00052610


Basic Information

Item Value
RNA id TCONS_00052610
length 2107
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id XLOC_025103
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 11855320 ~ 11858803 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cttttactttcagtacttgagtagtaaattttgaaataaactacttgcaatacttaagtacaaaaaatgttgaatacttttgtacttccacttaagtatggtgcttaaagagcacttctacttctactcaagtcaatttttgataaagcacttgtacttttacttaagtatgggtctctagtactttatacatctctgagtCTAGGTTTTGTTCATGTTGTCAtatctattctttttttttttttaataacagagCATATGCTATACCTAAATATTTAGCTACAGCATTCATTTCCTCGtctgtcattttattaatttcCTGACACATTTTTTGAGggcctaaaataaaaacaaccatACAACACTGCACTTCTTAGTTACTGACCTAAAAATGGTCATCTGTGCATGATTTTGAACACAGACAGAGGGAAGCTCATTATGCAAAGCTAACAATGACATCCTGAGTCATTCACACAGGGTGGATCTCAGTGCTGACGTTGCTGCAGGCTTTTCCAGTTCATCCGGTTTGAAGAAAAGCCGTCTGaccaaaacacaacacaataagAGGCGAAAACCAGACTCTGCTTGTCATTAACTGAACGTAAACttcattttataaattaaacatgCATGACAAACTCTCCACAGTGTGATTTACGTACAATTCACATTCATCATCAATGCCTACTGTTCTCTTTAGCTATATTGGCAACAATAGTGACAGTAAATCTGTAAATGGAGGCAAACGAATGGCAAAATGGCAAGACGTCACTGTTAAATCAATAATTAGCTTTCAGATATAGTGCAGTCTGTGGTCTGAGGCTCTTCTTCAAATGTTTTGTCATAAAGTGCATGAGAGGATCTTCCGAAAATAAGAGTCAGGAACTCCACAAGTGATATTCTGAAGTTAGTCTTTCATTCGTAGGCTAACGCATTAGCtacttggataaaaatatgaaCATATTTAAAATCCGTTTCAAGTTTGTGCCGATATTTGGGGTCCATTTTTTTGCTGTTGAATTTCAGTGATGGGATTTATCTTCCAATACACCATTTTGTGCCCACATCCAGACATCCTGGAATCATCTACAAATGAAAAGTCCCAACATTCAAGACATTGGAGAATACTGAAGATCCAATTGTTGACTCCAACCAACACATCATCCTTCCTGGGGAGTCGTCGAGTGATATCTAAAGTTCATTTATTTGAACAAATCAAAACAACTTCCTTGTTGACTTGAAGTtgcttcaaaaaatgtaaatcagaCTCTTCATAACCAGATCAGTCTTTAATGAAATCAATTAATTTGACATCTCCATACTTGTCCCCCAGTCCACAGTCATCCCGCTCATTTTGGCAAGAGCTCCGGAGTTTTCCGTGAGGTTCCCCAGATAACAAATGTCCAACACACCATTTTTGTAAAAATTCCAACATCCTGGTGGCATCTGCAAATGAAAAGTCCCAACATCCAAGACATTGTGTGTATATTGGAGATCCAACAGATCAACCAACCCACACGTCATCCTTTCTTGAGAGTCGTTGAGTGATTCCTTAAGTTCATTTACCTAAATGAATTCATAATCAAAACTTCCCTGGTGACTTAAAGTGGCTTTAGAAAATGAGAATACGACTTTTAAACCAGCATATGTCTTTTAaagccaagccagagaaaatcaATTCATCTCCACACCCTTCATCCAGTCCATATTAATTCTGCTCATTTGGGCAAGAGCTCCCGATATGGCACCGTGAGGTTCCCCAGATACCAAAAAATCCAAAACACCAAACTGAGGAAGACGATGATCGGCCCAGACAGGATTAAGAAGTCCCAAAAGCTGAGCGGTGCAAAAATGCCAACGAAGAAGAGGACCAGTCCGACTATATCAAACACAAGAGCCAGGAGGAAGAAAACAAAGCAGCGTCCAACTTTTTCCTTGCAGTCCATCTTGAAGAAGCTCAGATGAAGGAGAGCCGATGGACATACGACTGAACGGCAGAACAGATTCTGTGCATATGACTTTTATGAAGCAGCTCAGCTGCATTCTTACGTGGGGAATTTCTTTAACAGGGCAGGTAAGGAATGCAGCCACTGAAACAAGTTCATCT

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0021538 epithalamus development biological_process
GO:0010628 positive regulation of gene expression biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006928 movement of cell or subcellular component biological_process
GO:0006935 chemotaxis biological_process
GO:0030154 cell differentiation biological_process
GO:0048513 animal organ development biological_process
GO:0048522 positive regulation of cellular process biological_process
GO:0030182 neuron differentiation biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0009891 positive regulation of biosynthetic process biological_process
GO:0009893 positive regulation of metabolic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0031328 positive regulation of cellular biosynthetic process biological_process
GO:1902680 positive regulation of RNA biosynthetic process biological_process
GO:0051239 regulation of multicellular organismal process biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0051254 positive regulation of RNA metabolic process biological_process
GO:0048592 eye morphogenesis biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:0048593 camera-type eye morphogenesis biological_process
GO:1903508 positive regulation of nucleic acid-templated transcription biological_process
GO:0010468 regulation of gene expression biological_process
GO:0048869 cellular developmental process biological_process
GO:0045595 regulation of cell differentiation biological_process
GO:2000026 regulation of multicellular organismal development biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0040011 locomotion biological_process
GO:0097485 neuron projection guidance biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0061564 axon development biological_process
GO:0050793 regulation of developmental process biological_process
GO:0007399 nervous system development biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032502 developmental process biological_process
GO:0045935 positive regulation of nucleobase-containing compound metabolic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0007409 axonogenesis biological_process
GO:0007411 axon guidance biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0042330 taxis biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0010557 positive regulation of macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0022008 neurogenesis biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0048699 generation of neurons biological_process
GO:0060042 retina morphogenesis in camera-type eye biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052609 lncRNA upstream 274600 11576675 ~ 11580720 (+) True XLOC_025102
TCONS_00052608 lncRNA upstream 466779 11386938 ~ 11388541 (+) True XLOC_025099
TCONS_00052327 lncRNA upstream 521654 11326162 ~ 11333666 (+) True XLOC_025098
TCONS_00052326 lncRNA upstream 527705 11326162 ~ 11327615 (+) False XLOC_025098
TCONS_00052607 lncRNA upstream 657055 11188423 ~ 11198265 (+) True XLOC_025097
TCONS_00052612 lncRNA downstream 216085 12074888 ~ 12075135 (+) True XLOC_025105
TCONS_00052613 lncRNA downstream 218049 12076852 ~ 12081373 (+) True XLOC_025106
TCONS_00052614 lncRNA downstream 380889 12239692 ~ 12264458 (+) True XLOC_025107
TCONS_00052615 lncRNA downstream 979891 12838694 ~ 12854479 (+) False XLOC_025122
TCONS_00052616 lncRNA downstream 980222 12839025 ~ 12842930 (+) True XLOC_025122
TCONS_00049626 mRNA upstream 267711 11568523 ~ 11587609 (+) True XLOC_025101
TCONS_00049625 mRNA upstream 278983 11548516 ~ 11576337 (+) True XLOC_025100
TCONS_00049624 mRNA upstream 732406 11101585 ~ 11122914 (+) True XLOC_025096
TCONS_00049623 mRNA upstream 779844 11072958 ~ 11075476 (+) True XLOC_025095
TCONS_00049622 mRNA upstream 1213440 10637330 ~ 10641880 (+) True XLOC_025089
TCONS_00049627 mRNA downstream 67227 11926030 ~ 11947672 (+) False XLOC_025104
TCONS_00049629 mRNA downstream 463367 12322170 ~ 12335913 (+) False XLOC_025108
TCONS_00049630 mRNA downstream 475706 12334509 ~ 12335927 (+) True XLOC_025108
TCONS_00049631 mRNA downstream 581296 12440099 ~ 12487576 (+) False XLOC_025109
TCONS_00049632 mRNA downstream 625205 12484008 ~ 12486130 (+) True XLOC_025109
TCONS_00049621 other upstream 1691759 10152138 ~ 10163561 (+) True XLOC_025087
TCONS_00049609 other upstream 2813225 9041989 ~ 9042095 (+) True XLOC_025081
TCONS_00049608 other upstream 2813752 9041462 ~ 9041568 (+) True XLOC_025080
TCONS_00049607 other upstream 2814267 9040947 ~ 9041053 (+) True XLOC_025079
TCONS_00049606 other upstream 2814797 9040417 ~ 9040523 (+) True XLOC_025078
TCONS_00049628 other downstream 84746 11943549 ~ 11946957 (+) True XLOC_025104
TCONS_00049660 other downstream 1547423 13406226 ~ 13406323 (+) True XLOC_025130
TCONS_00049661 other downstream 1547648 13406451 ~ 13406538 (+) False XLOC_025131
TCONS_00049675 other downstream 1989423 13848226 ~ 13857716 (+) False XLOC_025143
TCONS_00049684 other downstream 2385863 14244666 ~ 14244784 (+) True XLOC_025148

Expression Profile

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