RNA id: TU1851436


Basic Information

Item Value
RNA id TU1851436
length 561
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G1617888
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 35387467 ~ 35388027 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctgaatgccaagcgtcacatctggaggaaacctggcacaatccctatggtgaagtgtggtggcagcatcatgctgtggggaagtttttcagctgcagggactgggagactaatcaggatcgagagaaagctgaacggagcaaagtatagagctccttaatgaaaacctgctccagagcactcaggacctctgactgaggtgaaggttcaccttccaacaggacaacgaccctaagcacacagccgagTCAATGTAGGaggggctttgggacaagtctctgaatgtccttgagtggtccagccagagcccgatctaacatctctggagagacctgaaaatagttgtgcagcgatgctccccatccaacctgtcagagcttgagaggatctgcagagaaaaatgggaggaactccccaaataaaggtgcgctaagcttgtagcgtcatacccaagactgcaatcgctgccaaaggtgctttaacaaagtgctgagtaaagttgtttttgtttctttttttcatttgatacatttgtaaacatttctaaagatctgtttttgct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1851429 lncRNA downstream 208 35386105 ~ 35387259 (-) True G1617883
TU1851428 lncRNA downstream 4026 35383205 ~ 35383441 (-) True G1617882
TU1851427 lncRNA downstream 4333 35382577 ~ 35383134 (-) True G1617881
TU1851419 lncRNA downstream 14659 35372407 ~ 35372808 (-) True G1617873
TU1851416 lncRNA downstream 20998 35366070 ~ 35366469 (-) True G1617870
TU1851435 lncRNA upstream 692 35388719 ~ 35389427 (-) True G1617887
TU1851434 lncRNA upstream 3524 35391551 ~ 35391791 (-) True G1617886
TU1851464 lncRNA upstream 48275 35436302 ~ 35436528 (-) True G1617914
TU1851645 lncRNA upstream 61533 35449560 ~ 35450923 (-) True G1618066
TU1851648 lncRNA upstream 66604 35454631 ~ 35455039 (-) True G1618069
XM_021574043.2 mRNA downstream 9814 35361013 ~ 35377653 (-) False LOC110497725
XM_036954697.1 mRNA downstream 51059 35328793 ~ 35336408 (-) False LOC110497723
XM_036954698.1 mRNA downstream 51059 35328793 ~ 35336408 (-) True LOC110497723
XM_021574037.2 mRNA downstream 56056 35328793 ~ 35331411 (-) False LOC110497723
LOC110498336 mRNA upstream 4385 35392412 ~ 35395320 (-) False LOC110498336
XM_021574049.2 mRNA upstream 51099 35439126 ~ 35441887 (-) True LOC110497729
XM_036954710.1 mRNA upstream 72185 35460212 ~ 35538760 (-) False ralgapa1
XM_036954709.1 mRNA upstream 72185 35460212 ~ 35538761 (-) False ralgapa1
XM_036954711.1 mRNA upstream 72185 35460212 ~ 35538761 (-) False ralgapa1
TU1849241 other downstream 1908031 33478593 ~ 33479436 (-) True G1615810
TU1849224 other downstream 1974250 33412219 ~ 33413217 (-) True G1615793
TU1848792 other downstream 2611763 32771917 ~ 32775704 (-) True LOC110497688
TU1848746 other downstream 2729698 32650926 ~ 32657769 (-) True G1615357
TU1848607 other downstream 2925888 32458530 ~ 32461579 (-) True G1615240
TU1851431 other upstream 4833 35392860 ~ 35396783 (-) True LOC110498336
TU1852753 other upstream 1013527 36401554 ~ 36405336 (-) True G1619119
TU1853281 other upstream 1266496 36654523 ~ 36768699 (-) True LOC110497753
TU1856858 other upstream 3568997 38957024 ~ 38958974 (-) True G1622757
TU1857173 other upstream 3977230 39365257 ~ 39370266 (-) False si:dkey-229e3.2

Expression Profile