RNA id: TU1851700


Basic Information

Item Value
RNA id TU1851700
length 2643
lncRNA type antisense_over
GC content 0.43
exon number 3
gene id G1618105
representative False

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 35546000 ~ 35610522 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCCAATCACTTTTTTATTGACATCATTATAGTTTGTCCAGTTGTATCATATATGTGCTataggaccagacagacagacatgctgtCTCAATGCTGCTGTTGGTTGGACCAAATCAAACCAGAGGCCTGGGGCATACTGGACATTCACAACGGGACATGCCATGCAGGCTCCTATTGTGGTTGCTAGGTAGATTCTGCATTCAAAGAAGTACTACAGCAGACGAGAAACATTTACATATTTACCCTATAACTGAGCTGAAAACAGTCAGCTCCTCTCCGCTGTGTACTTCAAGTACAATCTACTCAAAGAAGCATATTGCAGTGTTTGTGACGCCTCTGTAATGTCATTCACtgtaaaatataatttaaaaCGTCTAAAATAATGAACATCTAATAATTACCAGtcagaaataataataatctgcaCTTATAATCAAAGGTAATGTGAAAAAAAAGTCATTTGTTTTGGACAGAAAGAAACCATAGACAAGACATTAAGTGTTTTAGAATCACTGTTTTTGGCATTCACATCAGTGAGCTTGTGACCTATCTAACAAATTTAAGGTTACAGTAACTGAAATAACTACATCGGatgtaacctaacgtagcaggcataaaaCACTTGCCTGAATGGGGTCCCCACATTCTGTTTCCAAGGGGAAACAGCTTAAGTAGAGGTTATACCAACCCGCTGAGGGTGCATCTGATGAAGTTCATCGAGGAGGAGGAGCTCATTTCAAATGCAGTAGCCTCACCTGTTTTTAAACTGTTGCATTCTGGGATGCAGAGGAACAGCAAAAGGACACAACCTCACGACACACGTCTGTGAGGCCTTCCACACTCAGAGTGTGGGATATCATGTAAACTATAGTTTCACCATAAAATATACATCTTTCAAGTGACAGTGTGTAACTTCTTTAACAGTTTTTTTCCCATGAACAAATAACGAAAAGCCTTTTGAACACGCAAATGTACAAACGCACATACAAACAGGTGCATatatacacacgcacagacacgcaTACCGTACATACATACAAGCATTGTCAGGTTAAACACAGTCAGCATCATTTGGGTTGAAAGCTACAACAATTCACCAGcacagacatgggggggggggtctggtgaTGGTATGTACCACTGTAGCCAGCCATTGTCCGCTGCATAGCACTACATTGTCCATGTCATCTGGAATGCAAACCTCTGCAACTCTGTCTGCCTGAAAGTCTCTCTgcaccctccttctcctctcccatcgatcaaCAGCCAGAGAAAACAGATGGATCAGTGAGTAGCCAGCTTGTATGgctaactccccccccccccctccccaccatggatactgaacaaaaatataaaatgcaacatacaacaacttcaaagattttacagttaCAGttcacagagttacagttcacacctgtcaggtggatggattatctaggCAAAggagaaatcagtcaattgaaataaattaattaggccctaatctatggatttcacatgattgggcaggggcgcagccatgtgtgggcttgggagggcataggcccacccacttgggagccaggcccagccgaTCAGAAATAattttacagacagaaatactcagtttcatcagctgcctatatggctggtctcagacgatcccacaggtgaagaaaccggatgaggaggtcctgggctggcgtggttacacgtggtctatggttgtgaggccggttggacgtactgccaaattctctaaaacaacgttggaggcggcttatggtagagaaatgaacattcaattctctggcaacacctctggtggacattcctgcagtcagcatgccaattgcacactccctcaaaacttgagacatctgtggcattgtgttatgtgacaaaactgcactttttgagtgacattttagtgtccccagcacaaggtgcacctatgtagtgagaatgctgtttaatcagcttcttgatatgccacacctgtcaagtggatggacttggcaaaggagaaatgctcaataacagggatgtagacaatttatgcacaacatttgagagaaataacctttttgtgcatgtggaaaatttctgggatctttcagttcatgaaacatgggaccaacactttacatgttgcgtttatatttttgctcagtgtagaTTAGATAAAGGCTGGAGTGCAGGAGTCATAGTCAGGCACAGCAAGGGGTTGTGGTATACGATACAGTGGTCACAGCAGAGACTAGGGGGCGGAGACAGCACATTGGTGTTGGCATGGCAACAACAGTTACATTGATGTATATTATTGGACCAGATAATCAGTGTTTGGATTTTTTGTCCATGGTCCCTCCCTCCAGCTCATCTAGCTAGGCCTATGAATGGCCTCAAGAGGAGAGAGGTAGTTGTCTAATCTCATTGGGATGAAAGAGATGGGCCCGAGACATCACAGGGTGGTTGATGGTGGCGCTTCTGAGGAAGGTTTTTGGCACCTTCACACTGGGGGGGATAaagcagcttgtgtgtgtgtgtgtgtgtgtgtCTATATTTGTAGTGTGATTAGTGACATTTACCATTAAACCCAGCCCAATACCATTATTTCAATTGTTTTGTtgtaaaaacaccagaaaatcagctccaagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1851683 lncRNA downstream 12789 35522008 ~ 35533211 (-) True G1618091
TU1851660 lncRNA downstream 80265 35460213 ~ 35465735 (-) False ralgapa1
TU1851661 lncRNA downstream 80265 35460213 ~ 35465735 (-) False ralgapa1
TU1851664 lncRNA downstream 80265 35460213 ~ 35465735 (-) True ralgapa1
TU1851662 lncRNA downstream 81949 35460213 ~ 35464051 (-) False ralgapa1
TU1851734 lncRNA upstream 655 35611177 ~ 35611476 (-) True G1618137
TU1851759 lncRNA upstream 35266 35645788 ~ 35646011 (-) True G1618162
TU1851760 lncRNA upstream 35601 35646123 ~ 35646348 (-) True G1618163
TU1851781 lncRNA upstream 94521 35705043 ~ 35705339 (-) True G1618184
TU1851783 lncRNA upstream 95601 35706123 ~ 35706815 (-) True G1618186
XM_036954704.1 mRNA downstream 7238 35460212 ~ 35538762 (-) False ralgapa1
XM_036954705.1 mRNA downstream 7238 35460212 ~ 35538762 (-) False ralgapa1
XM_036954706.1 mRNA downstream 7238 35460212 ~ 35538762 (-) False ralgapa1
XM_036954708.1 mRNA downstream 7238 35460212 ~ 35538762 (-) False ralgapa1
XM_036954707.1 mRNA downstream 7238 35463752 ~ 35538762 (-) False ralgapa1
XM_021574062.2 mRNA upstream 37182 35647704 ~ 35661845 (-) True LOC110497737
XM_021574056.2 mRNA upstream 78947 35689469 ~ 35703718 (-) True LOC110497733
XM_021574064.2 mRNA upstream 285090 35895612 ~ 35935389 (-) True zgc:174356
XM_021574067.2 mRNA upstream 614705 36225227 ~ 36237234 (-) True LOC110497741
XM_021574068.2 mRNA upstream 630258 36240780 ~ 36323039 (-) True ccdc88c
TU1851431 other downstream 149217 35392860 ~ 35396783 (-) True LOC110498336
TU1849241 other downstream 2066564 33478593 ~ 33479436 (-) True G1615810
TU1849224 other downstream 2132783 33412219 ~ 33413217 (-) True G1615793
TU1848792 other downstream 2770296 32771917 ~ 32775704 (-) True LOC110497688
TU1848746 other downstream 2888231 32650926 ~ 32657769 (-) True G1615357
TU1852753 other upstream 791032 36401554 ~ 36405336 (-) True G1619119
TU1853281 other upstream 1044001 36654523 ~ 36768699 (-) True LOC110497753
TU1856858 other upstream 3346502 38957024 ~ 38958974 (-) True G1622757
TU1857173 other upstream 3754735 39365257 ~ 39370266 (-) False si:dkey-229e3.2
TU1857216 other upstream 3785546 39396068 ~ 39411784 (-) False G1623037

Expression Profile