RNA id: TU1851734



Basic Information


Item Value
RNA id TU1851734
length 300
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G1618137
representative True

Chromosome Information


Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 35611177 ~ 35611476 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CAGCTAGGCAGTGGGGTCTCCCAGGGGCCTTGGCACTGTAATAACGCTGCTGTCCTCACCGCcaccgcactctctctctctctcaatgttctTAATAACCTCCTGCTCAATCACTTCTATAAATTTTCAATTACAGAACACAGCCTGGCATTCCCCTGGAGATTTACTACACCGCGCCACGCCGCATGCTCCATCCCGAGCAGAGTCGAGCCAGGCAGGGAACTCTCATTTGTTTAAGGCAGGGCTAGTGTGCATTAAATCAACCCCTTCACACCCTTCCTCCCATTTCCTTCattcctc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1851700 lncRNA downstream 655 35546000 ~ 35610522 (-) False G1618105
TU1851699 lncRNA downstream 655 35607702 ~ 35610522 (-) True G1618105
TU1851702 lncRNA downstream 7283 35602940 ~ 35603894 (-) True G1618107
TU1851683 lncRNA downstream 77966 35522008 ~ 35533211 (-) True G1618091
TU1851661 lncRNA downstream 145442 35460213 ~ 35465735 (-) False ralgapa1
TU1851759 lncRNA upstream 34312 35645788 ~ 35646011 (-) True G1618162
TU1851760 lncRNA upstream 34647 35646123 ~ 35646348 (-) True G1618163
TU1851781 lncRNA upstream 93567 35705043 ~ 35705339 (-) True G1618184
TU1851783 lncRNA upstream 94647 35706123 ~ 35706815 (-) True G1618186
TU1851790 lncRNA upstream 103133 35714609 ~ 35714857 (-) True G1618193
XM_036954706.1 mRNA downstream 72415 35460212 ~ 35538762 (-) False ralgapa1
XM_021574062.2 mRNA upstream 36228 35647704 ~ 35661845 (-) True LOC110497737
XM_021574056.2 mRNA upstream 77993 35689469 ~ 35703718 (-) True LOC110497733
XM_021574064.2 mRNA upstream 284136 35895612 ~ 35935389 (-) True zgc:174356
XM_021574067.2 mRNA upstream 613751 36225227 ~ 36237234 (-) True LOC110497741
XM_021574068.2 mRNA upstream 629304 36240780 ~ 36323039 (-) True ccdc88c
TU1851431 other downstream 214394 35392860 ~ 35396783 (-) True LOC110498336
TU1849241 other downstream 2131741 33478593 ~ 33479436 (-) True G1615810
TU1849224 other downstream 2197960 33412219 ~ 33413217 (-) True G1615793
TU1848792 other downstream 2835473 32771917 ~ 32775704 (-) True LOC110497688
TU1848746 other downstream 2953408 32650926 ~ 32657769 (-) True G1615357
TU1852753 other upstream 790078 36401554 ~ 36405336 (-) True G1619119
TU1853281 other upstream 1043047 36654523 ~ 36768699 (-) True LOC110497753
TU1856858 other upstream 3345548 38957024 ~ 38958974 (-) True G1622757
TU1857173 other upstream 3753781 39365257 ~ 39370266 (-) False si:dkey-229e3.2
TU1857216 other upstream 3784592 39396068 ~ 39411784 (-) False G1623037

Expression Profile