RNA id: TU1851783



Basic Information


Item Value
RNA id TU1851783
length 693
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G1618186
representative True

Chromosome Information


Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 35706123 ~ 35706815 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


agagctggcagcccagccaaactgagcaattgggggagaagggccactCCAccgtaaaaggcacattacagcctgcttggagtttgccaaaaggcacctaaaggattctcagatcatgagaaacaagattctctggtctgatgaaaccaaaattgaactctttgtcctgaatgccaagcgccacgtctggaggaaacctggcaccatccctacggtgaagcatggtggtggtagcatcatgctgtgggaaggttttcagcggcagggactggagactagtcaggatcgagggaatgatgaacggagcaaagtacagagagttccttgatgaaaacctgctccagagtgctcaggatcttagactggggtgaaggttcacgttccaacatgacaacaaccctaagcacacagccaagacaacacaggagtggcattgggacaagtctctgaatgtccttaagtgtcccagccagagcctggacttgatcccgatctaacatctctggagaaacctaaaaaccaacctgaccgagcttgagaggatctgcagagaagaatgggagaaactccccaaatacaagtgtgccacgcttgtagcgtcatacccaagatgacttgaagctgtaatcgctaccaaaggtgcttacgcaaagtactgagtagagggtctgaatacttatgtaaatgtgatat

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1851781 lncRNA downstream 784 35705043 ~ 35705339 (-) True G1618184
TU1851760 lncRNA downstream 59775 35646123 ~ 35646348 (-) True G1618163
TU1851759 lncRNA downstream 60112 35645788 ~ 35646011 (-) True G1618162
TU1851734 lncRNA downstream 94647 35611177 ~ 35611476 (-) True G1618137
TU1851699 lncRNA downstream 95601 35607702 ~ 35610522 (-) True G1618105
TU1851790 lncRNA upstream 7794 35714609 ~ 35714857 (-) True G1618193
TU1851794 lncRNA upstream 11739 35718554 ~ 35718821 (-) True G1618197
TU1851795 lncRNA upstream 12305 35719120 ~ 35719348 (-) True G1618198
TU1851796 lncRNA upstream 12681 35719496 ~ 35719723 (-) True G1618199
TU1851806 lncRNA upstream 18157 35724972 ~ 35725327 (-) True G1618209
XM_021574056.2 mRNA downstream 2405 35689469 ~ 35703718 (-) True LOC110497733
XM_021574062.2 mRNA downstream 44278 35647704 ~ 35661845 (-) True LOC110497737
XM_036954707.1 mRNA downstream 167361 35463752 ~ 35538762 (-) False ralgapa1
XM_021574064.2 mRNA upstream 188797 35895612 ~ 35935389 (-) True zgc:174356
XM_021574067.2 mRNA upstream 518412 36225227 ~ 36237234 (-) True LOC110497741
XM_021574068.2 mRNA upstream 533965 36240780 ~ 36323039 (-) True ccdc88c
XM_021574075.2 mRNA upstream 661971 36368786 ~ 36370367 (-) False il17a/f1
XM_021574078.2 mRNA upstream 708911 36415726 ~ 36419930 (-) True LOC110497747
TU1851431 other downstream 309340 35392860 ~ 35396783 (-) True LOC110498336
TU1849241 other downstream 2226687 33478593 ~ 33479436 (-) True G1615810
TU1849224 other downstream 2292906 33412219 ~ 33413217 (-) True G1615793
TU1848792 other downstream 2930419 32771917 ~ 32775704 (-) True LOC110497688
TU1848746 other downstream 3048354 32650926 ~ 32657769 (-) True G1615357
TU1852753 other upstream 694739 36401554 ~ 36405336 (-) True G1619119
TU1853281 other upstream 947708 36654523 ~ 36768699 (-) True LOC110497753
TU1856858 other upstream 3250209 38957024 ~ 38958974 (-) True G1622757
TU1857173 other upstream 3658442 39365257 ~ 39370266 (-) False si:dkey-229e3.2
TU1857216 other upstream 3689253 39396068 ~ 39411784 (-) False G1623037

Expression Profile