Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00004701 |
| length | 831 |
| RNA type | mRNA |
| GC content | 0.52 |
| exon number | 10 |
| gene id | XLOC_002516 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007121.7 |
| NCBI id | CM002894.2 |
| chromosome length | 45420867 |
| location | 2759226 ~ 2788792 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0002244 | hematopoietic progenitor cell differentiation | biological_process |
| GO:0051568 | histone H3-K4 methylation | biological_process |
| GO:0060319 | primitive erythrocyte differentiation | biological_process |
| GO:0048188 | Set1C/COMPASS complex | cellular_component |
| GO:0042800 | histone methyltransferase activity (H3-K4 specific) | molecular_function |
| GO:0000976 | transcription regulatory region sequence-specific DNA binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-030131-494 | Predicted to enable transcription cis-regulatory region binding activity. Acts upstream of or within hematopoietic progenitor cell differentiation and primitive erythrocyte differentiation. Predicted to be part of Set1C/COMPASS complex. Orthologous to human ASH2L (ASH2 like, histone lysine methyltransferase complex subunit). |
| ensembl_id | ENSDART00000131749 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00004699 | lncRNA | downstream | 1073 | 2766874 ~ 2772037 (-) | False | XLOC_002516 |
| TCONS_00005976 | lncRNA | downstream | 819651 | 1948097 ~ 1953459 (-) | True | XLOC_002510 |
| TCONS_00005973 | lncRNA | downstream | 1031935 | 1678283 ~ 1741175 (-) | True | XLOC_002506 |
| TCONS_00005977 | lncRNA | upstream | 109311 | 2897979 ~ 2899304 (-) | True | XLOC_002518 |
| TCONS_00005978 | lncRNA | upstream | 533469 | 3322137 ~ 3326631 (-) | False | XLOC_002525 |
| TCONS_00004718 | lncRNA | upstream | 623881 | 3412549 ~ 3416153 (-) | True | XLOC_002527 |
| TCONS_00004721 | lncRNA | upstream | 633513 | 3422181 ~ 3427358 (-) | True | XLOC_002528 |
| TCONS_00005979 | lncRNA | upstream | 1165422 | 3954090 ~ 3956849 (-) | True | XLOC_002531 |
| TCONS_00004696 | mRNA | downstream | 59870 | 2695464 ~ 2713240 (-) | False | XLOC_002515 |
| TCONS_00004697 | mRNA | downstream | 59882 | 2696864 ~ 2713228 (-) | True | XLOC_002515 |
| TCONS_00004695 | mRNA | downstream | 90912 | 2680079 ~ 2682198 (-) | True | XLOC_002514 |
| TCONS_00004694 | mRNA | downstream | 169309 | 2573161 ~ 2603801 (-) | True | XLOC_002513 |
| TCONS_00004693 | mRNA | downstream | 246584 | 2504045 ~ 2526526 (-) | True | XLOC_002512 |
| TCONS_00004702 | mRNA | upstream | 67709 | 2856377 ~ 2875735 (-) | False | XLOC_002517 |
| TCONS_00004705 | mRNA | upstream | 136107 | 2924775 ~ 2942900 (-) | False | XLOC_002519 |
| TCONS_00004706 | mRNA | upstream | 136107 | 2924775 ~ 2943474 (-) | True | XLOC_002519 |
| TCONS_00004707 | mRNA | upstream | 155008 | 2943676 ~ 2960665 (-) | False | XLOC_002520 |
| TCONS_00004708 | mRNA | upstream | 158383 | 2947051 ~ 2971407 (-) | True | XLOC_002520 |
| TCONS_00004658 | other | downstream | 2433083 | 339912 ~ 340027 (-) | True | XLOC_002487 |
| TCONS_00004640 | other | downstream | 2696919 | 73450 ~ 76191 (-) | True | XLOC_002475 |
| TCONS_00004639 | other | downstream | 2698720 | 72433 ~ 74390 (-) | False | XLOC_002475 |
| TCONS_00004703 | other | upstream | 78052 | 2866720 ~ 2875735 (-) | False | XLOC_002517 |
| TCONS_00004704 | other | upstream | 79810 | 2868478 ~ 2875735 (-) | True | XLOC_002517 |
| TCONS_00004722 | other | upstream | 717872 | 3506540 ~ 3506654 (-) | True | XLOC_002529 |
| TCONS_00004723 | other | upstream | 979983 | 3768651 ~ 3768766 (-) | True | XLOC_002530 |
| TCONS_00004736 | other | upstream | 2229890 | 5018558 ~ 5020500 (-) | False | XLOC_002543 |
