RNA id: TU1853590



Basic Information


Item Value
RNA id TU1853590
length 219
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G1619905
representative True

Chromosome Information


Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 37016616 ~ 37016834 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CAGCATATAAAGAGGATGGGTGAAGGGATGGTGAATAACCCAGTTAGCAGTATTTTCCTGGGTTTGTAATGTCTAAGACGGCTAAAAAGGAAGTATGAAATTCCTGATTGACCATACTGCCATGGCTATATACTGAGAAAAGAAGATGCAAGCGCCCTTCCCTAGTGGCGCAGATGATAAAAGACCTGGCTTGGGAACCAAACATTGCAGGTTTATTCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1853580 lncRNA downstream 8604 37007542 ~ 37008012 (-) True G1619895
TU1853277 lncRNA downstream 267182 36748932 ~ 36749434 (-) True fam98b
TU1853298 lncRNA downstream 332509 36678724 ~ 36684107 (-) True G1619632
TU1853210 lncRNA downstream 423860 36590977 ~ 36592756 (-) True LOC110498571
TU1853164 lncRNA downstream 486445 36529893 ~ 36530171 (-) True G1619518
TU1853601 lncRNA upstream 4594 37021428 ~ 37021726 (-) True G1619916
TU1853694 lncRNA upstream 6764 37023598 ~ 37023806 (-) True G1619996
TU1853774 lncRNA upstream 73223 37090057 ~ 37091448 (-) True G1620034
TU1853750 lncRNA upstream 100026 37116860 ~ 37147984 (-) True G1620015
TU1853730 lncRNA upstream 122753 37139587 ~ 37142105 (-) True G1620003
XM_021574093.2 mRNA downstream 175816 36764705 ~ 36840800 (-) False LOC110497753
XM_021574091.2 mRNA downstream 259132 36748853 ~ 36757484 (-) False fam98b
XM_021574085.2 mRNA downstream 276987 36719921 ~ 36739629 (-) False LOC110497751
XM_021574087.2 mRNA downstream 276987 36719921 ~ 36739629 (-) True LOC110497751
XM_021574090.2 mRNA downstream 276995 36719921 ~ 36739621 (-) False LOC110497751
XR_005037707.1 mRNA upstream 12420 37029254 ~ 37036523 (-) True LOC118941471
XM_036954729.1 mRNA upstream 149936 37166770 ~ 37243329 (-) False cdin1
XM_036954732.1 mRNA upstream 149936 37166770 ~ 37243329 (-) False cdin1
XM_036954733.1 mRNA upstream 149936 37166770 ~ 37243329 (-) False cdin1
XM_036954730.1 mRNA upstream 149936 37166770 ~ 37243458 (-) False cdin1
TU1853281 other downstream 247917 36654523 ~ 36768699 (-) True LOC110497753
TU1852753 other downstream 611280 36401554 ~ 36405336 (-) True G1619119
TU1851431 other downstream 1619833 35392860 ~ 35396783 (-) True LOC110498336
TU1849241 other downstream 3537180 33478593 ~ 33479436 (-) True G1615810
TU1849224 other downstream 3603399 33412219 ~ 33413217 (-) True G1615793
TU1856858 other upstream 1940190 38957024 ~ 38958974 (-) True G1622757
TU1857173 other upstream 2348423 39365257 ~ 39370266 (-) False si:dkey-229e3.2
TU1857216 other upstream 2379234 39396068 ~ 39411784 (-) False G1623037
TU1857211 other upstream 2385222 39402056 ~ 39411784 (-) False G1623037
TU1857214 other upstream 2387958 39404792 ~ 39411784 (-) False G1623037

Expression Profile