RNA id: TCONS_00049636


Basic Information

Item Value
RNA id TCONS_00049636
length 4994
RNA type mRNA
GC content 0.50
exon number 20
gene id XLOC_025111
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 12593558 ~ 12699905 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAATTTATGGAAGAGGAGCCAGCTGGACTAGTCGCGGGGGTCAAGATCAAGCGTTTGGCAAAGGTGTTCAAAGTGGGAAATAAGAGCAAGGAGGCGGTGAGGGATTTAACGCTCAACATGTTTGAAGGGCAGATCACTGTCCTGCTTGGGCACAATGGAGCCGGCAAGACCACCACACTGTCAATGCTGACCGGTCTTTTCCCGCCCTCCAGCGGTCGTGCCTACATCAATGGATATGATATTTGTCAGGATATGGCTCTGATCCGCCGCAGTCTCGGTTTGTGTCCGCAGCATGACGTGCTCTTCGATAACCTCACCGTCAGAGAACACCTGCTCTTCTACACACAGCTGAAGGGTTACCCTCGCGAGAAGATCCCTGGAGAGGTGGACCGGATCATCCGCATCCTCAACCTTGAAGACAAGCGTAACGCCAAATGCAAGACTCTTTCTGGTGGCATGAAGAGAAAGCTTTCCATCGGCATTGCTTTAATTGGAGACTCAAAGGTGGTGATGTTGGACGAGCCCACCTCAGGAATGGACCCCTCAGCCCGTCGGGCCACCTGGGACCTGCTGCAGGGCGAGAAACGTGGCCGCACCATCCTGCTTACCACACACTTCATGGACGAGGCCGACCTGCTGGGAGATCGCATCGCCATCATGGCCAGCGGAGAGCTCCAGTTTGAGCTGCTGTTTGCTGAGCTGGAGATGAATCGAGATGAGTTGGGCATCGCCAGTTATGGGGCGTCTGTTACCACCATGGAGGAGGTTTTTCTCAGGGTCGGCAAGCTGGTGGACTCGAGTCTGGATATTCAGGCGATTCAGCTCCCGGCTCTGCAGTACCAGCACGAGCGGCGCTCTCACGACTGGACCATGGACGACTCCAGCAGCATCAGCGGCATGACAGACGTGACCGATTTCACCGACAGCTGCACAATGATCTCAGAGGACGGATCCAACATCAAGCTCAACACCGGGGCCAGACTGTATATGCAGCAGTTCTACGCCATGTTCCTGAAGAGGGCGCTCTACAGCTGGCGCAACTGGAAAGTGATGGTGGCTCAGTTTCTGGTGCCGCTCATCTTCACAGTGTTGGCCCTCGTAGTGGCCCGTAGCCTGCCCAGCAGCCATTCTTCACCACAGCTCCGCCTGGCGCTAAAACAATACGGCCAAACCCATGTACCTGTTGCTGTTGAAGCTAACGCCGGGCCACTGGCTTCACTTCTGGCTGAAATCTACACCACACAGCTGCCTTCCCAGAATGCCATTGCTGCACCTAATATAACAGATTTCTCGGAGTATGTGCTTTATAATGCTCAGAGGGAGGGCGGAGCTTTCAACGAGCACTGTGTGGTCGGCGCCGCTTTCAGAAGCAGTGATGTTATCGGATACTTCAATAATCAGGGCTATCATACACCCGCGACAGCGCTCATGCTGGTGGACAACGCTCTCTTCAAGCTCCTAGCCGGACCCAATGCCTCCATCCAGACTGGAAATGACCCCATGCCACGCAATGTGTCCGAGACGGCCCAGAGCCAGCTCTCTGAGAGTCAGACAGGCTTTGCCATCGCCATAAACCTGATGTACGGCATGGCTTCATTAGCCAGCACCTTTGCCCTGCTCCTCGTGTCCGAGCGCTCGGTCAAGTCCAAGCACGTGCAGCAGGTCAGCGGGGTTTACCTCACCAACTTCTGGTTCTCTGCCCTGCTGTGGGACCTCATCAACTTCCTGTTACCCTGCTTGCTCATGCTGGTGGTCTTCAGAGTGTTCTCAGTGAAGGCGTTTGTAGCCCAAAACCACCTGGTGGATGTTCTGTTCTTGCTGCTTCTGTACGGCTGGGCGGTGATTCCTCTCATGTACTTGATGAGTTTCCTGTTTTCCACGGCCGCCACAGCCTACACGCGCCTCACCATCTTCAACATCATCAGCGGCACCGCCACCTTCCTCGCCGTCACCATCATGACCATACCTGAGCTGAATTTGCTCCATCTCTCGCACCTCCTGGATAAGGTCTTCCTGATCTTCCCGAATTACTGCCTGGGCATGTCCTTCACTGAGTTCTACCAGAACTACGAGATGATCACCTTCTGCACCTCCAGCCCCTTAGCGAAGTACATCTGCAAGTACTACAACATCACGTATCAAATGAACTACTTTTCCATGGAGGAGCCTGGAGTCGGACGCTTCCTGGTGGCTTTGTCCTTGCAAGGCGTCGTCTTCATAATCCTGCTGTTCCTCATTGAGCTCCGGTGCATCCGCCTGCTACTCAACCTCTGCAGAAGACGCAAGAAGGCTCTGCTGTTAGCAGAAGAAGCTCTTCAACCTGAGGACCGAGACGTTGCAGAGGAGAGGAAGAGGGTTTTAGAGTGTCAGCCGGTGGTGGAGTCTATGGTGGGCAGCCCGCTCGTTGTACAGGAGCTCAGCAAGATGTATTCAGGTGGGCAGTCGCTGTTAGCAGTGGACCGTCTCTCATTGGCCGTTGGGAAGGGCGAGTGCTTTGGTTTGCTGGGATTTAATGGAGCGGGGAAAACTACAACATTCAAAATGCTGACGGGAGATGAAAGCATCACTTCAGGGGACGCGTTCATTGATGGCTACAGCATCCTTACAGATGTCAAAAAGGTGCAGCAGAGAATCGGCTACTGCCCCCAGTTCGATGCGGTGCTGGATCACATGACAGGACGGGAAACCCTGAGCATGTACGCCAGACTGAGGGGCATCCCAGAGAAATATGTCACCGCCTGTGTGGAAAACGTCCTGCGTTCGCTGCTGCTCGAACCTCACGCTGACAAACTCGTCCGCAGCTACAGTGGTGGCAATAAAAGAAAGTTGAGCGCAGGCATGGCTCTGATTGGTGGTCCGCCTGTGATCTTCCTGGATGAACCATCCACTGGCATGGACCCTGTGGCCAGACGGCTGTTGTGGGATGCAATCACGCGCACCAGAGAGTCTGGCAAAGCCATCATTATAACCTCACACAGTATGGAGGAGTGTGAGGCGCTGTGCACTCGTCTGGCTGTGATGGTGAACGGTCAGTTTAAGTGTCTGGGCAGCCCACAGCACCTGAAGAGCAAGTTCGGCAGCGGGTACACACTTCTGGCTAAAGTGCGTGTGGAGACGGAGCTGGAGGAGAGTGACCTGCAGCTCTTCAAAGACTTCATTGAGAGCACTTTTCCAGGAAGTTTACTGAAGGATGAACACCAGGGCATGGTCCACTATCACCTGACAGATAAAACACTGACCTGGGCACAGGTGTTCGGTGTTCTAGAAACAGCCAAAGAGAAGTACAGCATCGAGGACTACTGCGTCAGCCAGATCTCACTGGAGCAGGTGTTTCTCAGCTTCGCTCAGTTCCAGCACTGCGCCGAGGCCTGCAGGAAGTGACACGCTGAGTGAGGCTCCTCCCCCTGACATTCACCTAAAGATGAGGAGATGCCGCCTGGGGCGACTGACTCTCGGTCAGACCACTGGACATTGCTCAGGTGtctctcctctcacacacacacacacctgacatgATCATAAACACTGACGCAAGATCTCGGCCAGTTATTTCAAGCCTGAATGTGCGTTTGAGTCTCGACAGGATGTTCATCACACTATCTGAAAGCAGATGTCTTTTTTAAATTGGTGAGAAGAGACGTTGAGATATCTAATGTGTGCACTTGCTGTGTTATTTATGAatgtctgtttatttttgtttgttttcttgagAATGAAGGTACACGTGTGTTAGTCCCTCCCTGATGAAAAAAGGGCAGAAATATTGAAAAACGACGTCCAAAAAATAAGGAAAAGTGCTGCTTCTTTGGGCTTTGCAATGTTGTAGATTATAAATTGAAGGGAGTTTACTGATTGATATTTTTAATGGCGTTTTTTAAAATTTCCACAAGAGCTCCATTCCCCTCGTAAAGCAATTTGTAGTCCGTAATTCATTGGAAATCAGAGTTTGTGTCAAAAGATGTCATTTTTAATGATACTTGCTGCTAAAAGCCAACTCCAAAAACATTCCTTAGTTTCTCAGCAcgcatttccaaaaaaaaaacagaaatgttttaacGATTTTTCTCTTCACATGTGACAttgcttctttatttttttgctttggattgTGACGTACAAAGGAATTATTCAATGGTGCAACAGGGGCATTGTGTAATTTCGTGGATGACCACTAGAGGACGTACAGTGCacttttttcttttagaaaatcTACATCAAACTGAATGTCTTTAGATACACTAAATGTCCTCTTTATGATGAGAATCTGTCATAAGCGCAACGCTTTTGTGTTTGCTCCTGTGGTTCGGACTTGTTTAGCAGTGTTTGGTAGCACTACTGATCATGCGCTATCAGAAAGAGACACAAAAGAGCTGACAGAATTGAACGTGGCTGTTcacaaatcattcatttattccattgAATGTCTTTATGGACCACAAGGAAGTAAGTTTGATGCTGCTGAGCTAATCCCTCCAGTGCTTTAATCACTGTTACGCCAAGTCTTGAGTCAGTCTGAAGGGTTTCAGAGAGACTCAATACAATCAGTGAGGAAAAGCAAAACTGACATCAGTTCAACCTGCGCAGGTCCACGTTTCCGTCCTGATTCATCTTAACTGAATGTACTCCTTAGCGAAGGAGGAAAAAACACGGGCTCATCGGTGGCCTTAACCTCGTACATGCTGACATACTGTAGATACAACAGGGCTCGAGGGTGACTGACCACAAACTAGTTTGTTTTCTATGTTTTTGTCGATTGTCGTCTAACTGGCTGTCGTGTCTGAACTGCTTGTCTGAAACTGAAATACTGCATTTTGAGAAGGCGAACCTGAGAATGACAATGATGATTAACGATGGTCAAATATTTACCATAATGCAAAAAGGGAATTTCCATTGTAATCTTGTGTACTGTATCACTAAATTAACCTTGTGAGAAATGTAAGTATTgccattttccttttttattattaaatatgccTTATGCTAAGGAATTGTGT

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006869 lipid transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016887 ATPase activity molecular_function
GO:0042626 ATPase-coupled transmembrane transporter activity molecular_function
GO:0005319 lipid transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050517-2 Predicted to enable ATPase-coupled transmembrane transporter activity and lipid transporter activity. Predicted to be involved in lipid transport. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in intracellular membrane-bounded organelle. Is expressed in swim bladder. Human ortholog(s) of this gene implicated in pulmonary alveolar proteinosis. Orthologous to human ABCA3 (ATP binding cassette subfamily A member 3).

Ensembl:

ensembl_id ENSDART00000165980

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052614 lncRNA upstream 387786 12239692 ~ 12264458 (+) True XLOC_025107
TCONS_00052613 lncRNA upstream 570871 12076852 ~ 12081373 (+) True XLOC_025106
TCONS_00052612 lncRNA upstream 577109 12074888 ~ 12075135 (+) True XLOC_025105
TCONS_00052610 lncRNA upstream 793441 11855320 ~ 11858803 (+) False XLOC_025103
TCONS_00052615 lncRNA downstream 138789 12838694 ~ 12854479 (+) False XLOC_025122
TCONS_00052616 lncRNA downstream 139120 12839025 ~ 12842930 (+) True XLOC_025122
TCONS_00049655 lncRNA downstream 449645 13149550 ~ 13167328 (+) True XLOC_025125
TCONS_00052617 lncRNA downstream 660798 13360703 ~ 13367508 (+) True XLOC_025128
TCONS_00052328 lncRNA downstream 689957 13389862 ~ 13390838 (+) False XLOC_025129
TCONS_00049633 mRNA upstream 65631 12554801 ~ 12586613 (+) True XLOC_025110
TCONS_00049631 mRNA upstream 164668 12440099 ~ 12487576 (+) False XLOC_025109
TCONS_00049632 mRNA upstream 166114 12484008 ~ 12486130 (+) True XLOC_025109
TCONS_00049630 mRNA upstream 316317 12334509 ~ 12335927 (+) True XLOC_025108
TCONS_00049629 mRNA upstream 316331 12322170 ~ 12335913 (+) False XLOC_025108
TCONS_00049637 mRNA downstream 10445 12710350 ~ 12715432 (+) True XLOC_025112
TCONS_00049638 mRNA downstream 18195 12718100 ~ 12730554 (+) False XLOC_025113
TCONS_00049639 mRNA downstream 18266 12718171 ~ 12720543 (+) False XLOC_025113
TCONS_00049640 mRNA downstream 25438 12725343 ~ 12730486 (+) True XLOC_025113
TCONS_00049641 mRNA downstream 32477 12732382 ~ 12740310 (+) True XLOC_025114
TCONS_00049628 other upstream 705287 11943549 ~ 11946957 (+) True XLOC_025104
TCONS_00049621 other upstream 2488683 10152138 ~ 10163561 (+) True XLOC_025087
TCONS_00049609 other upstream 3610149 9041989 ~ 9042095 (+) True XLOC_025081
TCONS_00049608 other upstream 3610676 9041462 ~ 9041568 (+) True XLOC_025080
TCONS_00049607 other upstream 3611191 9040947 ~ 9041053 (+) True XLOC_025079
TCONS_00049660 other downstream 706321 13406226 ~ 13406323 (+) True XLOC_025130
TCONS_00049661 other downstream 706546 13406451 ~ 13406538 (+) False XLOC_025131
TCONS_00049675 other downstream 1148321 13848226 ~ 13857716 (+) False XLOC_025143
TCONS_00049684 other downstream 1544761 14244666 ~ 14244784 (+) True XLOC_025148
TCONS_00049690 other downstream 1699320 14399225 ~ 14399652 (+) True XLOC_025154

Expression Profile

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