RNA id: TU1856886


Basic Information

Item Value
RNA id TU1856886
length 1395
lncRNA type antisense_over
GC content 0.36
exon number 2
gene id G1622784
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 39003830 ~ 39005396 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAACTGAAGTGCAAAGCTCAGTTTATTTATGAATTGGGAATAAAATACCCAAATGCATTTCATAATGTATGAATGTTGAACAGCAGTTATGAAAGTAACTGGTAGCACTTGTGTTTGGCCAAAAGAATGAAACATGCCTGGCATAATGGCAACTCATACTTTCATGAGCCATGAAATGGTAAGTATTTGAGCGCTCTAATTTGGTGTCATGACATTGTCATGGGTTGTAGGCTTTCATGAAATGCCACAACAGGTAATACTGTAGGTGTAGCTACTATATTGCTTTATACATTATTCAGCTCTACATTAAGTCTCTAGGGGTGACAGGGGCAGACCAACTAGCTATGGCAAGACAAGTGGCATAGAAAGTTAGATTGTTTCCTGGGGTTGAAATGGTATATTATTAGGCCCATATTATATAATTAAAAATGATCtgaagtcacagaaaaacattaTTTAAAGACTCATTCGTGCTGTGTTTCCATTGCAGTTAACAAAGACTAATTGAGTCATGAAATTATCAGAAAGGCTTGATTACATGCGCTTGAGGTTCAAAGGagaagtatttttttttacaaccaaatcCCTATTTTTGATGTAAATGGTATGTTATAGAAGGGCCCCTAAACTACACAAGGATGAAGAAGTGATTTGCTGGTTagggtaagtttctcaaaaacaagtgaaatcACAAAAAAGGATATTCTATAACATGTCATTTagcattaaaaaaaagaaaaattacAAAAAACAAATCACCTTTAAGGCCATAGCACAAAACAAGTTAAAAAAAATGCTAAAAAGCAAATTGGTATAATAAATTAAAAAAGTGTAACATCattaaggattacagcaattacAATGCTGTATACAAGGGCACtgagaaatgttttatttttgcaTTTCAAATGAATTCCCTGCcattaaataaatcaaaaaaaTAACTTTCTTTATAAGAACACTCAGAACATCTTACATTTCCTACTATGAACATTCTTCATTTGCATTTTGAGGTTTGCATGTTCACCTGCATGGCTATGACATGTGAATTAATAGCattggcaggtgtgtgtgtgtgcgtgggggggGGGTTCCAGAGAAAGTAGTGTGTCCTGTTAATAAAGTTTTTCCTGTGTTCACAGGTCTAGGGCTGTTTCTGTTGAAGCTTTGGTATATAGTCATGGATTTTTCCCAGATTTCGTCACGCAGCCATTGCTATATTAAGTAAATATAACCTACCCACAATGAAAAGTAGACCAAACAAAACAAGGCACACGGTTCATTTTCAGACAACAAACTTGTTTTTGGTGGTGGAGCCGCTCTTTGTGGCGGTGTCAGAGTGGGACTGGTAGCCAATGGTCATCTTCATGGGGATTCCCAAGCGCTCCTTATAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1856875 lncRNA downstream 67160 38935354 ~ 38936670 (-) True lrit3b
TU1856876 lncRNA downstream 71478 38931301 ~ 38932352 (-) True G1622775
TU1856873 lncRNA downstream 75519 38927707 ~ 38928311 (-) True G1622772
TU1856872 lncRNA downstream 76207 38927407 ~ 38927623 (-) True G1622771
TU1856865 lncRNA downstream 92604 38910945 ~ 38911226 (-) True G1622764
TU1857011 lncRNA upstream 166312 39171708 ~ 39171949 (-) True G1622892
TU1857042 lncRNA upstream 190091 39195487 ~ 39196095 (-) True G1622914
TU1857048 lncRNA upstream 199901 39205297 ~ 39207491 (-) True G1622918
TU1857073 lncRNA upstream 215287 39220683 ~ 39220918 (-) True G1622936
TU1857126 lncRNA upstream 320893 39326289 ~ 39326730 (-) True G1622987
NM_001160648.2 mRNA downstream 15075 38985797 ~ 38988755 (-) True ampm1
XM_036953846.1 mRNA downstream 64219 38935415 ~ 38939611 (-) False lrit3b
XM_036953845.1 mRNA downstream 64314 38935415 ~ 38939516 (-) False lrit3b
XM_021574155.2 mRNA downstream 76919 38911281 ~ 38926911 (-) True LOC110497791
XM_021574154.2 mRNA downstream 105009 38892389 ~ 38898821 (-) True LOC110497790
XM_021574171.2 mRNA upstream 219294 39224690 ~ 39230702 (-) False enpp4
XM_036954769.1 mRNA upstream 219294 39224690 ~ 39231092 (-) True enpp4
XM_021574172.2 mRNA upstream 236802 39242198 ~ 39263880 (-) True cdc5l
XM_021575231.2 mRNA upstream 270847 39276243 ~ 39278434 (-) True LOC110498575
XM_021574177.2 mRNA upstream 273300 39278696 ~ 39281695 (-) False LOC110497802
TU1856858 other downstream 44856 38957024 ~ 38958974 (-) True G1622757
TU1853281 other downstream 2235131 36654523 ~ 36768699 (-) True LOC110497753
TU1852753 other downstream 2598494 36401554 ~ 36405336 (-) True G1619119
TU1851431 other downstream 3607047 35392860 ~ 35396783 (-) True LOC110498336
TU1849241 other downstream 5524394 33478593 ~ 33479436 (-) True G1615810
TU1857173 other upstream 359861 39365257 ~ 39370266 (-) False si:dkey-229e3.2
TU1857216 other upstream 390672 39396068 ~ 39411784 (-) False G1623037
TU1857211 other upstream 396660 39402056 ~ 39411784 (-) False G1623037
TU1857214 other upstream 399396 39404792 ~ 39411784 (-) False G1623037
TU1857215 other upstream 401220 39406616 ~ 39411784 (-) False G1623037

Expression Profile