RNA id: TCONS_00049644


Basic Information

Item Value
RNA id TCONS_00049644
length 330
RNA type mRNA
GC content 0.49
exon number 2
gene id XLOC_025115
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 12744083 ~ 12749198 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGAACTACAGTTGTTCCTCTGCTGACGTCTGTTCTGAAGGATGAAAGTGAATGGGAGAAACCAAACAGCTTTTACCCAGAACACTTCCTTGATGAGAAGGGCCAGTTCGTCAGAAGAGATGCTTTCATGCCCTTTTCTGCAGgGCGCAGGGTTTGTCTGGGAGAGAGTTTGGCCAGGATGGAGCTCTTCCTGTTCTTCACGTCTCTCCTTCAGAGCTATCGCTTCACAACTCCACCTGGAGTGTCTGAAGATGAGCTGGATCTCAAAGGAATTGTTGGAATCACGTTGAACCCATCTCCACACAAGCTGTGTGCAATCAGACGCTCCTGA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0016712 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0020037 heme binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091113-17 Predicted to enable heme binding activity; iron ion binding activity; and oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen. Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDART00000181174

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052614 lncRNA upstream 483580 12239692 ~ 12264458 (+) True XLOC_025107
TCONS_00052613 lncRNA upstream 666665 12076852 ~ 12081373 (+) True XLOC_025106
TCONS_00052612 lncRNA upstream 672903 12074888 ~ 12075135 (+) True XLOC_025105
TCONS_00052610 lncRNA upstream 889235 11855320 ~ 11858803 (+) False XLOC_025103
TCONS_00052615 lncRNA downstream 89512 12838694 ~ 12854479 (+) False XLOC_025122
TCONS_00052616 lncRNA downstream 89843 12839025 ~ 12842930 (+) True XLOC_025122
TCONS_00049655 lncRNA downstream 400368 13149550 ~ 13167328 (+) True XLOC_025125
TCONS_00052617 lncRNA downstream 611521 13360703 ~ 13367508 (+) True XLOC_025128
TCONS_00052328 lncRNA downstream 640680 13389862 ~ 13390838 (+) False XLOC_025129
TCONS_00049643 mRNA upstream 930 12744092 ~ 12747108 (+) False XLOC_025115
TCONS_00049641 mRNA upstream 7728 12732382 ~ 12740310 (+) True XLOC_025114
TCONS_00049638 mRNA upstream 17484 12718100 ~ 12730554 (+) False XLOC_025113
TCONS_00049640 mRNA upstream 17552 12725343 ~ 12730486 (+) True XLOC_025113
TCONS_00049639 mRNA upstream 27495 12718171 ~ 12720543 (+) False XLOC_025113
TCONS_00049645 mRNA downstream 6353 12755535 ~ 12763119 (+) True XLOC_025116
TCONS_00049646 mRNA downstream 15712 12764894 ~ 12780758 (+) True XLOC_025117
TCONS_00049647 mRNA downstream 35278 12784460 ~ 12802380 (+) True XLOC_025118
TCONS_00049648 mRNA downstream 67180 12816362 ~ 12826386 (+) False XLOC_025119
TCONS_00049649 mRNA downstream 67180 12816362 ~ 12826387 (+) True XLOC_025119
TCONS_00049628 other upstream 801081 11943549 ~ 11946957 (+) True XLOC_025104
TCONS_00049621 other upstream 2584477 10152138 ~ 10163561 (+) True XLOC_025087
TCONS_00049609 other upstream 3705943 9041989 ~ 9042095 (+) True XLOC_025081
TCONS_00049608 other upstream 3706470 9041462 ~ 9041568 (+) True XLOC_025080
TCONS_00049607 other upstream 3706985 9040947 ~ 9041053 (+) True XLOC_025079
TCONS_00049660 other downstream 657044 13406226 ~ 13406323 (+) True XLOC_025130
TCONS_00049661 other downstream 657269 13406451 ~ 13406538 (+) False XLOC_025131
TCONS_00049675 other downstream 1099044 13848226 ~ 13857716 (+) False XLOC_025143
TCONS_00049684 other downstream 1495484 14244666 ~ 14244784 (+) True XLOC_025148
TCONS_00049690 other downstream 1650043 14399225 ~ 14399652 (+) True XLOC_025154

Expression Profile

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