RNA id: TCONS_00049652


Basic Information

Item Value
RNA id TCONS_00049652
length 668
RNA type mRNA
GC content 0.43
exon number 5
gene id XLOC_025121
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 12835370 ~ 12837643 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGTCTGTCATTATTCAGTCAGTATGAAACTCAGTCAACTTCCTCTTGTGCTCTTGCTGATTTCAAACATCCACTCTGAACATGTTGAAGACTATCCTAAAGCCAGTGTGAGGATTACTCCTGATCTGCATGTGTTCAGAGGAGAGTCAGTCACTCTCAGATGTGACATTAATGCTGAAGGAGTCTCTAGCTGGCTGTACAGCTGGTATAAAGAAGGTTCAGAAGGTGCATTCAGTGGTTTACAGGAATATATATTCAATGTTACTGAGTCTTATGCAGGTAAATACTCCTGTTCTGGCACTGAGAGTAAAGGTTCACGCAGATCACAAATGAGTGATGCAGTTGCACTGACAGTATCAGACAGAGCCCAGACAGCTTTAAGTGTTTCTCCACAGAACTGGTTGACTGaaggagattcagtgactctgacTTGTGAGGTTAACGGCTCCTCTACAGGCTGGACATTCAACTGGTACATGCTAATGCTTTCTGACAATAGTTATCATCATAAACTTCTCTCAGACAGCAgtagaggagctggaggaaaatACACTGTCAGTTCTGTTGCTCTAAAACAAACAGGAGTTTATTTGTGTGAAATAGAGAGAGGAAAACCAGCCTATACAACTTTCAGCAACACACTGCCACTGTGGGTCACTGGTGAGTTT

Function

GO:

id name namespace
GO:0007166 cell surface receptor signaling pathway biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0004888 transmembrane signaling receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091204-353 Predicted to enable transmembrane signaling receptor activity. Predicted to be involved in cell surface receptor signaling pathway. Predicted to be integral component of plasma membrane.

Ensembl:

ensembl_id ENSDART00000166089

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052614 lncRNA upstream 570912 12239692 ~ 12264458 (+) True XLOC_025107
TCONS_00052613 lncRNA upstream 753997 12076852 ~ 12081373 (+) True XLOC_025106
TCONS_00052612 lncRNA upstream 760235 12074888 ~ 12075135 (+) True XLOC_025105
TCONS_00052610 lncRNA upstream 976567 11855320 ~ 11858803 (+) False XLOC_025103
TCONS_00052615 lncRNA downstream 1051 12838694 ~ 12854479 (+) False XLOC_025122
TCONS_00052616 lncRNA downstream 1382 12839025 ~ 12842930 (+) True XLOC_025122
TCONS_00049655 lncRNA downstream 311907 13149550 ~ 13167328 (+) True XLOC_025125
TCONS_00052617 lncRNA downstream 523060 13360703 ~ 13367508 (+) True XLOC_025128
TCONS_00052328 lncRNA downstream 552219 13389862 ~ 13390838 (+) False XLOC_025129
TCONS_00049651 mRNA upstream 2851 12829566 ~ 12832519 (+) True XLOC_025120
TCONS_00049650 mRNA upstream 4043 12828824 ~ 12831327 (+) False XLOC_025120
TCONS_00049649 mRNA upstream 8983 12816362 ~ 12826387 (+) True XLOC_025119
TCONS_00049648 mRNA upstream 8984 12816362 ~ 12826386 (+) False XLOC_025119
TCONS_00049647 mRNA upstream 32990 12784460 ~ 12802380 (+) True XLOC_025118
TCONS_00049653 mRNA downstream 10480 12848123 ~ 12850397 (+) True XLOC_025123
TCONS_00049654 mRNA downstream 23515 12861158 ~ 12862480 (+) True XLOC_025124
TCONS_00049656 mRNA downstream 352369 13190012 ~ 13258103 (+) False XLOC_025126
TCONS_00049657 mRNA downstream 352385 13190028 ~ 13258898 (+) False XLOC_025126
TCONS_00049658 mRNA downstream 405047 13242690 ~ 13258898 (+) True XLOC_025126
TCONS_00049628 other upstream 888413 11943549 ~ 11946957 (+) True XLOC_025104
TCONS_00049621 other upstream 2671809 10152138 ~ 10163561 (+) True XLOC_025087
TCONS_00049609 other upstream 3793275 9041989 ~ 9042095 (+) True XLOC_025081
TCONS_00049608 other upstream 3793802 9041462 ~ 9041568 (+) True XLOC_025080
TCONS_00049607 other upstream 3794317 9040947 ~ 9041053 (+) True XLOC_025079
TCONS_00049660 other downstream 568583 13406226 ~ 13406323 (+) True XLOC_025130
TCONS_00049661 other downstream 568808 13406451 ~ 13406538 (+) False XLOC_025131
TCONS_00049675 other downstream 1010583 13848226 ~ 13857716 (+) False XLOC_025143
TCONS_00049684 other downstream 1407023 14244666 ~ 14244784 (+) True XLOC_025148
TCONS_00049690 other downstream 1561582 14399225 ~ 14399652 (+) True XLOC_025154

Expression Profile

//