RNA id: TCONS_00052616


Basic Information

Item Value
RNA id TCONS_00052616
length 1339
lncRNA type inter_gene
GC content 0.39
exon number 6
gene id XLOC_025122
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 12838694 ~ 12854479 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GACAAACAagGTGTAAGATCTCCGTCTCCCTCTAGAGTCAGTCAGACGTCACAGCAGAAGCAGAATGAAGCGGGACACCAGACACTGCTCTCTGAAACTGCACATACAGATACAACACATGAAGACATATGCAAAACAGACAGTGAAAGTGGAGCTGAACTCACCTATGCTGAGGTTGAGCTCAAATCTACAAAGAAAATGAAGGGAAACACAGATAAAGGGAACAACACTGAAAATTCTGGCTGTGTTTACTCTAAACTGAAGCTGAAAACACATCAGAGTGCTGGATCTAGTGATGGGACGTATGCTCAGGTTAAATAAATATCAGTCCCAGGAGGCCGATGAGTTTAGCTTGAAGACTGGTAGAGAATCCCCAGGGTCATCAgtggtttattattagtttttacttcTCACAGCGCTTGAGGGAGTTAGCAAAAGTAAagttatattatttaaacattagacATTTTGCAGTTGCTATATAATCGAACAGGATCATTACAGCACACCTAGATTTTTAATCTTTGATGCATTGAACTGTATGCTTTTAttactgtatactgtaaacttttgCACTTTTATTGTGTCATTTGTGAATGCACCTTTCCTACAGTTATTTTGTGTCATTCTATTAACATTTATAAACCTCTCACACAACTAAAATCTGACCTATTATAGGCTTTGTTACCTGCTGTTGAGGCTGATGATAGCAGAACTTCACTGAATTAACATTGAATCAACGGTTAAAaggttaaaataaatattcatcagCTTTGCTCtctcaaataatgttttatcaaTGATAGAAACAGATTGAAGAACACAGACACAATGATGAAATTAATGAGATAATTAAGTGATtaactgagggtgctttcacacctacacttttgtttcggaacctgtctcatttgcccagttagcgcggttcatttggcatatgtgaatcaagcaatcgtgctcggatccacgccaaatcaatcgcttcgagatcgcttgaatgaggtggtctcggctcgattgaaacacactcgtggatcgattgtagtgagaaggcgatacgatccgagcctggttatatcacagtgttttatggatgtgtaataggcatacggcatatgaagagagaattctGAGTAGAGCGGGAGGTcatttcagacatcccaagtctcctggaagtttcaGGAGTCTCCCGGAAATgcataggtaacactttacaataacagtacatgaataatgatgtattaatatgtaatttaaacattagtttattatgaataaatgatgagtAAGGGTATGCACTAAtcaactacaacatgagtcacatgagttcatgtgt

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052614 lncRNA upstream 574567 12239692 ~ 12264458 (+) True XLOC_025107
TCONS_00052613 lncRNA upstream 757652 12076852 ~ 12081373 (+) True XLOC_025106
TCONS_00052612 lncRNA upstream 763890 12074888 ~ 12075135 (+) True XLOC_025105
TCONS_00052610 lncRNA upstream 980222 11855320 ~ 11858803 (+) False XLOC_025103
TCONS_00049655 lncRNA downstream 306620 13149550 ~ 13167328 (+) True XLOC_025125
TCONS_00052617 lncRNA downstream 517773 13360703 ~ 13367508 (+) True XLOC_025128
TCONS_00052328 lncRNA downstream 546932 13389862 ~ 13390838 (+) False XLOC_025129
TCONS_00052618 lncRNA downstream 547014 13389944 ~ 13406082 (+) True XLOC_025129
TCONS_00052619 lncRNA downstream 563607 13406537 ~ 13413213 (+) True XLOC_025131
TCONS_00049652 mRNA upstream 1382 12835370 ~ 12837643 (+) True XLOC_025121
TCONS_00049651 mRNA upstream 6506 12829566 ~ 12832519 (+) True XLOC_025120
TCONS_00049650 mRNA upstream 7698 12828824 ~ 12831327 (+) False XLOC_025120
TCONS_00049649 mRNA upstream 12638 12816362 ~ 12826387 (+) True XLOC_025119
TCONS_00049648 mRNA upstream 12639 12816362 ~ 12826386 (+) False XLOC_025119
TCONS_00049653 mRNA downstream 5193 12848123 ~ 12850397 (+) True XLOC_025123
TCONS_00049654 mRNA downstream 18228 12861158 ~ 12862480 (+) True XLOC_025124
TCONS_00049656 mRNA downstream 347082 13190012 ~ 13258103 (+) False XLOC_025126
TCONS_00049657 mRNA downstream 347098 13190028 ~ 13258898 (+) False XLOC_025126
TCONS_00049658 mRNA downstream 399760 13242690 ~ 13258898 (+) True XLOC_025126
TCONS_00049628 other upstream 892068 11943549 ~ 11946957 (+) True XLOC_025104
TCONS_00049621 other upstream 2675464 10152138 ~ 10163561 (+) True XLOC_025087
TCONS_00049609 other upstream 3796930 9041989 ~ 9042095 (+) True XLOC_025081
TCONS_00049608 other upstream 3797457 9041462 ~ 9041568 (+) True XLOC_025080
TCONS_00049607 other upstream 3797972 9040947 ~ 9041053 (+) True XLOC_025079
TCONS_00049660 other downstream 563296 13406226 ~ 13406323 (+) True XLOC_025130
TCONS_00049661 other downstream 563521 13406451 ~ 13406538 (+) False XLOC_025131
TCONS_00049675 other downstream 1005296 13848226 ~ 13857716 (+) False XLOC_025143
TCONS_00049684 other downstream 1401736 14244666 ~ 14244784 (+) True XLOC_025148
TCONS_00049690 other downstream 1556295 14399225 ~ 14399652 (+) True XLOC_025154

Expression Profile

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