RNA id: TCONS_00049655


Basic Information

Item Value
RNA id TCONS_00049655
length 3482
lncRNA type lincRNA
GC content 0.41
exon number 5
gene id XLOC_025125
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 13149550 ~ 13167328 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCTTTGTGAATTTATTCTATATACAGTTTGTCATACTTGCACAAAACAGTGGACCGACTGAATGAAAATAATCTAAACTTCAAATCTAAGCATCTTAAAAACCATCTAATCTGTTCTGAAGACAGTTAGGTTATTTAAGATACTTTAATAAAACCTTCCACACTTATTTCTGTATTTCGGATTGTCTTCCTGTTATGAACACTGGTGCTGATTCATGTGAAATCTTTTACAATTAAAGAAAGACAAAGCTCttaatttaccggtcaatctactttcctactctcacctatggtcataagctttgggttatgactgaaaggacaagatctcagttacaagcggccgaaatgagtttacctcacagggtggcagggcgcacccttataggtGAGGAGCTCTttcacctgggaggagctcggagtagagcctcctccacatcgagagaagtcagctgagttgGCGCAGGCATCTGTTtaggatgcctcctggacgcctacctaggaaggtattccaggcatgtcccaccagcaGGAGGCCTCGGGAAAGACCCAGGACAGGATGGAGGGACTATATCTCTCGTCTGACCTAGGAACGCCTTAGGattcccctggaggagctggaggaagtgtctggggagaaggAAGTCTGTGGTTCTGACtacccccgcgacccggccctggaaaagcggcagataataaatgaatgaataaataaacgaatagAAACATATTTTCACAAATGAAGGCAAACATTTTAGTGACATCTTATGAAATGTAAATTGCTTCATGGCAAAAGAATGTTTCTGTTTTCCTTCAGGTCCTGTGGTAGGCGAGTTTCTTCCAGCTCTCCTGCCTCTGTTGAAGAGCTGTGTTGACCCCAGCCGAGAGCCTGAGATGAGGCTGCACATCTTCACCATGCTGTCCAAACTACTGCTGGACGCCAAAAACACACTGGACTCACAGGGGCAGTTTGGTGAACACATGGAGATGGTCCTGCAGGATTTGTTGATGCCCAATCTGGTGTGGCGTTCAGGTCGATCAGCTGCAGCTGTCAGAACCGCTGCTCTCAGCTGTCTGTTAGCTGTCCTACATGGAGAGGCTTTCCCAGCAGAGAGAGTGGTGTCAGCGGTGGACTCTCTCTCCTCTCTGCTGATCTCTGCACTGGAGGAAGACTCAAAACTGGCTCGTCTTCTGGCCTGTAGATCTCTGACCTCCCTGCTGAAGATCACAGCTCAGCAGATCAGCACTGACAAGCTCAACCAAGTCTATCCAGAGCTGCTGAAGCGTGTGGATGACAGCAGTGAAGACGTGCGTGTGGAGGCTCTCAAGTCTCTGAGTGTGTGGTTCTGCTCTTTGGGGAAAAACTATGACATGCAGTCCAACCGTCCACACCTGGAGCTCCTGTTCCAGCAGCTGCTGCTCTACATGGATGATCCTGACACCACAGTCCAGAACACAGTGCTCGgtGTTCTGAAGGTGGCGAGTGCAGTGGATGGAGATCTGTTACAGCAGCAGacagagagtgtgagagagaaacaGCGCAGCCCAGAGTACTGTGACAAACTCCTGCAGCACATACACTCATTATGACAATCAagccctaaacacacacacaaagacactcacacacgcacaaaactccagacatgcacacacacttactgTGTACATTCAGACAATTTGTGAATGGGCAAAATCTAAGTGTATTTTCACCTTTGCTCTTTTATTATTGGTGAacttttattaaagtaaatgttatatatatgaAAACAGTAAACatcatacattttataattaatataccCAAATTGCTCATAAAAACATTGACTGTAGTTGTCTCCCAGATTTGAAGatgaacttatttaaaatgtgcctTTTCTTTTTGCCGTCGACACCTTTATTATTCATTGAACTTAcgattgttaataaataaattcgtttattaaactttttttttcacatttctgttTTCAGCGGATGCTTTCTTGCCACAGAAACATGTCAAGAATACATTCATAAATAACAATACTATCATCATAGTAATTACTAAAGGCATATAagaggaatagttcacacaaaaatgacaatttgcagatttattcattcatttttgcgtactatccctttaagtattcTCCATAAACTACATTAGTTAGCACAAAATGCTAGTTAATCAATACTGTTTGTTCCcttcatacactacctgacaaaagtcttgtcgcctatccaagttttaggaacaacaaataacaatttgacttctagttgatcatttgggatcagaagtggcttaaatgaaaggtaaaggcgtctattttaccaaaataaaatatgatcatgtcttgatttttaattatttaattaggacagtaagctctgtaAGTAAGTCCTGTCtcttaaaagaaataatgtacagtatagaatataaagtcatgctgcagtggaaaaagaatgaatattgtgtatgacccccctgagcttggaggactgcatccatacatctctgcaatgacttaaatcacttactaataaagtcatctgaagtcgttcttgcaggactcccagagttcatcaagattcatcttcaatgcctctttcttcatcttaccctagacatgctcaatatgttcatgtctgctgactgggctggccaatcctggagcaccttgaccttctttgctttcaggaactttgatatggaggctgaagtatgagaaggagcgctatcctgctggagaatttacCGTCTgcagtggtttgtaatgtaatgggcagcacaaatgtcttgatgcctcaggcttgtgatgttgccatccattctgcagatctcttgcacgcccccatactgaatgtgaccccaaaccatgaattttccttcaccaaacttgactgatttctttgagaatcttggctccatgctggttccagtaggtcttctgcagtatttgtgatgattaagatgcagtacaacagatgattcatggaaaaaatcaaccttctgccacttttccaaatgatcaactagaagtcaagttattatctgttgctcttacaactgagatcgacgacaagacttttgtcaggtagcgtagACAGTAATGTTCTGGCAGTATTTTGATATAATTATGGATTATAATGTTTTGTATCCTATATGAAATATTATCCAGATCTATTTCTTGATTAAATGCAGTATGATGCATTAGAAGCAGGAAGAACTAGATATTGATGACATTTAATAATGGTGATGATTGGACGAGATGCCGGGCCGGGGGAATTTTTTTAGAAGTTTGTCTAAGTTCATCACAATATTAATTTCCATGTTGGGTTGATGCGGGGTCAGCCTAGTGAATGCTGTTTCTTCAACCTCTCCGAATGCTGAACTCTCTCCTCTGGAGTCTTTTTGTagctcctgaaacacagaaacacttttattttgtatattttcttttgtgaATTGAATTTCTATTGTGATTTCTATCTGTG

Function

GO:

id name namespace
GO:0034968 histone lysine methylation biological_process
GO:0043414 macromolecule methylation biological_process
GO:0016571 histone methylation biological_process
GO:0006259 DNA metabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component

KEGG: NA

Ensembl:

ensembl_id ENSDART00000194031

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052615 lncRNA upstream 295071 12838694 ~ 12854479 (+) False XLOC_025122
TCONS_00052616 lncRNA upstream 306620 12839025 ~ 12842930 (+) True XLOC_025122
TCONS_00052614 lncRNA upstream 885092 12239692 ~ 12264458 (+) True XLOC_025107
TCONS_00052613 lncRNA upstream 1068177 12076852 ~ 12081373 (+) True XLOC_025106
TCONS_00052612 lncRNA upstream 1074415 12074888 ~ 12075135 (+) True XLOC_025105
TCONS_00052617 lncRNA downstream 193375 13360703 ~ 13367508 (+) True XLOC_025128
TCONS_00052328 lncRNA downstream 222534 13389862 ~ 13390838 (+) False XLOC_025129
TCONS_00052618 lncRNA downstream 222616 13389944 ~ 13406082 (+) True XLOC_025129
TCONS_00052619 lncRNA downstream 239209 13406537 ~ 13413213 (+) True XLOC_025131
TCONS_00052620 lncRNA downstream 309544 13476872 ~ 13477873 (+) True XLOC_025134
TCONS_00049654 mRNA upstream 287070 12861158 ~ 12862480 (+) True XLOC_025124
TCONS_00049653 mRNA upstream 299153 12848123 ~ 12850397 (+) True XLOC_025123
TCONS_00049652 mRNA upstream 311907 12835370 ~ 12837643 (+) True XLOC_025121
TCONS_00049651 mRNA upstream 317031 12829566 ~ 12832519 (+) True XLOC_025120
TCONS_00049650 mRNA upstream 318223 12828824 ~ 12831327 (+) False XLOC_025120
TCONS_00049656 mRNA downstream 22684 13190012 ~ 13258103 (+) False XLOC_025126
TCONS_00049657 mRNA downstream 22700 13190028 ~ 13258898 (+) False XLOC_025126
TCONS_00049658 mRNA downstream 75362 13242690 ~ 13258898 (+) True XLOC_025126
TCONS_00049659 mRNA downstream 165542 13332870 ~ 13347096 (+) True XLOC_025127
TCONS_00049662 mRNA downstream 273572 13440900 ~ 13446085 (+) True XLOC_025132
TCONS_00049628 other upstream 1202593 11943549 ~ 11946957 (+) True XLOC_025104
TCONS_00049621 other upstream 2985989 10152138 ~ 10163561 (+) True XLOC_025087
TCONS_00049609 other upstream 4107455 9041989 ~ 9042095 (+) True XLOC_025081
TCONS_00049608 other upstream 4107982 9041462 ~ 9041568 (+) True XLOC_025080
TCONS_00049607 other upstream 4108497 9040947 ~ 9041053 (+) True XLOC_025079
TCONS_00049660 other downstream 238898 13406226 ~ 13406323 (+) True XLOC_025130
TCONS_00049661 other downstream 239123 13406451 ~ 13406538 (+) False XLOC_025131
TCONS_00049675 other downstream 680898 13848226 ~ 13857716 (+) False XLOC_025143
TCONS_00049684 other downstream 1077338 14244666 ~ 14244784 (+) True XLOC_025148
TCONS_00049690 other downstream 1231897 14399225 ~ 14399652 (+) True XLOC_025154

Expression Profile

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