RNA id: TCONS_00004704


Basic Information

Item Value
RNA id TCONS_00004704
length 1606
RNA type processed_transcript
GC content 0.39
exon number 3
gene id XLOC_002517
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 2856377 ~ 2875735 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACACGTGTGAAGATGGAGGAGGACAGCGTACGCTTTCATGAGATGGGTTTAGATGATCGACTGTTAAAGGGCTCTGGCGGATTTAGGATGGTCTCAACCAACCCTTATCCAGGAGAAAGCCATCCCTCTGGCACTGGAGGGGAAAGATCTGCTGGCCCGAGCTCGAACCGGATCCGGAAAAACAGCCGCCTATGCAGTTCCACTGATCCAGAGAGTCCTCACATCCAAACAGACTGTACGAGAGCAGGCTGTCAGAGCTGTAGTTCTGGTCCCCACCAAGGAGCTGGGCCAGCAGGTCCAAACCATGATCCGCCAGCTCACGGCGTACTGCAGCAGAGACGTCCGAGTCGCAGACATCTCTGGAAAAGCAGATCTGTCTGCTCAGAAGTCAGTGATGCAGCAAATCCTCACACAAATACTGCTGATCCTCATACTGGACTGAATATATGTATTTTGTCTTGCCTCATACAAAATGCAGAATAGATGCATATAAGAATTGAACACAcagaattcaaacaaacaaaatgagcTTCAAGTAGCTGTAATATTATCATTTATCATAGAGGTATTTAATTTTTACCTTTAGTTGCTGACTTTCACACACTGttgtcacacaactgtgtttaaaccccttataaaagcgATCTTTACATAATAAGTcttctttaaatataaaataaatcaaatcaaatgagaAGGGGTAAATAGGGAAGTGTCAAAAGCATAATAGGACatcttttttgtcattttaattccACTAACACTTATAATTCTTCATCTTTTGTTCGCAGGCCCATTTTAATGGAGAAGCCGGATATAGTGGTGAGCACCCCGTCTCGCATTCAGGCTCATATTAACGCTCAGAACCTGCAGCTTCACTCCTCATTAGAGATGCTGGTCATCGACGAGGCCGATCTTCTCTTCTCATTCGGCTTTGAGGCGGATCTGAAAAACCTGCTGTGGTGCGTTTCTGCTCAGAACAGATTCTGATTGCAATTTCTCAACATGAGTGAATAGTCTGTTTTGTTAGCTTCAGCATTTTCTCCCAGCATAAATCAGATTCTCTCAAAATTGCATTGTAGAGAGGAACAGAAAAGGACAATTGTCACTTTTTATTAGTACAGTCAGAAAAACTTAAGATACTGGTATAAATTTGCAAATACAGTTGGAAGTCAGAGTTATtgaaccccctgaattattagccctcttgtatatttttctccccaatttctgtttaagacaggtaagattttttcaacacatttctaatcataatagttttaataactcatttcttgatgacagcacataatatttgactagatgttttacAAGATACTGGTAGTATtgcgcttaaagtgacatttaaaggcttaactagggtaattaggctaattagacaggtcattgtataacaggggTTTTATATTTCctaagggtctaataattttgaccttaaaatggttttaaaaatataaaactgcttttattctagctgaaatgaaacaaataagactttctccagaagaaaaaacattattgcACATACTGTGGAAAAAGTCCTCAATCTTTTgattcatttgagaaatattttaaagaaataaaa

Function

GO:

id name namespace
GO:0005730 nucleolus cellular_component
GO:0005524 ATP binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004386 helicase activity molecular_function

KEGG:

id description
ko03009 Ribosome biogenesis

ZFIN:

id description
ZDB-GENE-040825-3 Predicted to enable several functions, including ATP binding activity; RNA helicase activity; and nucleic acid binding activity. Predicted to be active in nucleolus. Orthologous to human DDX56 (DEAD-box helicase 56).

Ensembl:

ensembl_id ENSDART00000137180

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00004699 lncRNA downstream 96441 2766874 ~ 2772037 (-) False XLOC_002516
TCONS_00005976 lncRNA downstream 915019 1948097 ~ 1953459 (-) True XLOC_002510
TCONS_00005974 lncRNA downstream 1149841 1708092 ~ 1718637 (-) False XLOC_002505
TCONS_00005975 lncRNA downstream 1151928 1712579 ~ 1716550 (-) True XLOC_002505
TCONS_00004679 lncRNA downstream 1171404 1687459 ~ 1697074 (-) True XLOC_002507
TCONS_00005977 lncRNA upstream 22244 2897979 ~ 2899304 (-) True XLOC_002518
TCONS_00005978 lncRNA upstream 446402 3322137 ~ 3326631 (-) False XLOC_002525
TCONS_00004718 lncRNA upstream 536814 3412549 ~ 3416153 (-) True XLOC_002527
TCONS_00004721 lncRNA upstream 546446 3422181 ~ 3427358 (-) True XLOC_002528
TCONS_00005979 lncRNA upstream 1078355 3954090 ~ 3956849 (-) True XLOC_002531
TCONS_00004698 mRNA downstream 79686 2759226 ~ 2788792 (-) False XLOC_002516
TCONS_00004700 mRNA downstream 79791 2767257 ~ 2788687 (-) False XLOC_002516
TCONS_00004701 mRNA downstream 79810 2773110 ~ 2788668 (-) True XLOC_002516
TCONS_00004696 mRNA downstream 155238 2695464 ~ 2713240 (-) False XLOC_002515
TCONS_00004697 mRNA downstream 155250 2696864 ~ 2713228 (-) True XLOC_002515
TCONS_00004705 mRNA upstream 49040 2924775 ~ 2942900 (-) False XLOC_002519
TCONS_00004706 mRNA upstream 49040 2924775 ~ 2943474 (-) True XLOC_002519
TCONS_00004707 mRNA upstream 67941 2943676 ~ 2960665 (-) False XLOC_002520
TCONS_00004708 mRNA upstream 71316 2947051 ~ 2971407 (-) True XLOC_002520
TCONS_00004710 mRNA upstream 155901 3031636 ~ 3033270 (-) False XLOC_002521
TCONS_00004658 other downstream 2528451 339912 ~ 340027 (-) True XLOC_002487
TCONS_00004640 other downstream 2792287 73450 ~ 76191 (-) True XLOC_002475
TCONS_00004639 other downstream 2794088 72433 ~ 74390 (-) False XLOC_002475
TCONS_00004722 other upstream 630805 3506540 ~ 3506654 (-) True XLOC_002529
TCONS_00004723 other upstream 892916 3768651 ~ 3768766 (-) True XLOC_002530
TCONS_00004736 other upstream 2142823 5018558 ~ 5020500 (-) False XLOC_002543
TCONS_00004737 other upstream 2144451 5020186 ~ 5022414 (-) False XLOC_002543
TCONS_00004738 other upstream 2144542 5020277 ~ 5024285 (-) True XLOC_002543

Expression Profile

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