RNA id: TCONS_00049658


Basic Information

Item Value
RNA id TCONS_00049658
length 2572
RNA type mRNA
GC content 0.45
exon number 11
gene id XLOC_025126
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 13190012 ~ 13258898 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tttccctgtttatAGGATTATGGTATCTCGGTCTACCCATCGCCCTGTCCTTCCTTCCCGCTGTAAACCTCACTGAGTGGAAAACATCAGTCACTTCTTTCGCATCACTTCCTGCTCTGCCATCCTTTCCCTCTTTTCCTTCGTTACCAGCGCTACCCTCTTTCACAAAAGAACCCCTGCTTAAAGAGCAAGATGTCCCTCCACTGGTCGTCGCACAGGCTGCGTCAGACTCCATTAACAGCGAGCGTCTGGCTCTGCTGGAGCAGCGTGTGTCTGCGTTGTGGGAAAGCGTCCGGCAGGGTGAACTGAAGGCCAAGCAGCAGCACGAGGAGGCGCTGGGTTTAACTCAATCTCTCCAGGAGCAGATcaagacacagacagacagggaGAACCTCGGCCTGTGGGTCACAGAGCTCCTGCAGCCCAAATTCACTGCGCTGGAGGGGGACATGAAGACCGAGACCCTAAGCAGAGCAGAGACTGAAGAGCAGCATATACAGCATCAGAACATTCTTGAAGCTCGGCTCGCTGAACTGGAAGTCCTGCTACAAAACCTGAACTCCAGAACTGAGGACATCCACCTCTCTCAGCAGACTCCAGTCCAGGCTCCCGTCAGTGTTGGAGTCTCTCAGGAAAAGCATGAGGCTTTGCTTTCTGAGGTTCAGAGGCTGGAAGCGGAGCTCGGACGAATCAGAGGAGACCTGCAGGGGGTGATGGGATGCCAAGGGAAATGTGACCGACTCGACACCATTCATGAAACGGTGTCTGCGCAGGTGAAGGAGCAGCTGTACGCTCTGTTGTACGGTCGGGACAGAGGTGAAGCAGTCATCCCCGAACCTCTGCTGCCCTGGTTGGCCTCTCAGTACACCAGCAACTCTGACCTCACAGCAACCCTTGTGACCCTGGAGCGAAGCATTCTGGGAAACCTGTCGCTTCAGCTTCAGGAAAGTAAACAGCAGCAGGCCTCTGCTGAAACCGTCACACAGACTGTCGCTCACACCGCCGAGGCTGCAGGGATGTCAGAGGAGCAAGTGCAGCTGATCGTACAGCGTGCGCTCAAGCTGTACTCTGAAGACCGCACGGGACAAGTGGACTACGCTCTGGAGTCTGGAGGTGGCAGTGTCCTCAGCACTCGCTGTTCAGAGACATACGAGACGAAAACTGCACTGATGAGCCTGTTTGGAATCCCGCTGTGGTATTTCTCCCAGTCGCCACGTGTCGTCATCCAGCCGGACATGTACCCAGGAAACTGCTGGGCTTTTAAAGGCTCCCAAGGTTATCTGGTGATCAGGCTCTCGTTACGTGTCATCCCCAATGGCTTCTGCCTGGAGCACATTCCTAAAAGCCTCTCTCCTTCTGGAAACATCAGCAGCGCACCTCGACGTTTCTCGGTCTACGGGTTGGATGATGAATATCAGGACGAAGGGAAACTGCTTGGAGACTACACTTATCAAGAAGACGGAGATTCACTCCAGAACTTCCCAGTTATGgaGGAGAACGACAAAGCTTTTCAGATCATCGAGATGCGAGTCCTGTCCAACTGGGGTCATCCCGAATACACCTGCCTGTACCGCTTCAGAGTCCACGGCAAACCTCACGCTCAATAATGTACAACACTATATAACCCTTTATGTACATACAGGACACGCTTGGACTTGATACAGCACTGGGATGCGCGAGCTGAGTTTTTAAGACTTTGATACGAATGATGGCCGAAGCTGAGTTACGAGGAGCACAGCAGGAAAAGAGCAATGTATTAAAGCTAAGGATTTCCTCTAATTTTGGCTGTTCTTGCACTGATTCCTGCCCCATCCGCTCTCACCCGTAGAGGTGTCTGTGCCTTCAGACAGATCACGGTTCTCTCATTCGCGGGACGTTTCGCTTGTGTGTTTTCTGAATGTAGTACAGAGAGGCATGGAGGTCAGGACATGATCTCCGCCTCGTCCGCCGGTCACTGATGCTTTAATTAGCCGCGAAAGGGAACTTTTAGCAACACCAAACCGCAATATGTCTGGgtcatatttgcattttaaagacTTTATTGTCTTTTAGgtctgtttaaattaattttattttaattttaacataattttatttgaaattaagcAAAAAACATTTAACTAGTAGTcatttttaacagaaattgaTCTTTTTTGGGTGATATTTGTGGAATTTTTCCTGTTTTaggtttgtttaaatttattttaattgtaacaattttctttaatattaagcAAAAAGCTTTTAATTAGTAgaaattttaaagatgaattttgtttgtttgggtcaTATTTGCAGAATGTATTCTCTTAGGTCTGTtggaattcattttaatttaattttaacattgTTTTCCTTGAATTTAAGCAAAAAAGAAGTGTAATTAGtggtctttttttaattaaatcacatttttgtctgggttatatatatatatatatatatatatatatatatatatatatatatatatactaaatttATCCTGTTTTaggtttgtttaaatttattttattttaattgtatttataacaATTATTTTCTTTGAAATTAAGCAAAAAATTGTGTATAA

Function

GO:

id name namespace
GO:0006998 nuclear envelope organization biological_process
GO:0034993 meiotic nuclear membrane microtubule tethering complex cellular_component
GO:0005635 nuclear envelope cellular_component
GO:0005639 integral component of nuclear inner membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0043495 protein-membrane adaptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-551 Predicted to enable protein-membrane adaptor activity. Predicted to be involved in nuclear envelope organization. Predicted to be located in membrane. Predicted to be integral component of nuclear inner membrane. Predicted to be part of meiotic nuclear membrane microtubule tethering complex. Predicted to be active in nuclear envelope. Orthologous to human SUN1 (Sad1 and UNC84 domain containing 1).

Ensembl:

ensembl_id ENSDART00000157097

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00049655 lncRNA upstream 75362 13149550 ~ 13167328 (+) True XLOC_025125
TCONS_00052615 lncRNA upstream 388211 12838694 ~ 12854479 (+) False XLOC_025122
TCONS_00052616 lncRNA upstream 399760 12839025 ~ 12842930 (+) True XLOC_025122
TCONS_00052614 lncRNA upstream 978232 12239692 ~ 12264458 (+) True XLOC_025107
TCONS_00052613 lncRNA upstream 1161317 12076852 ~ 12081373 (+) True XLOC_025106
TCONS_00052617 lncRNA downstream 101805 13360703 ~ 13367508 (+) True XLOC_025128
TCONS_00052328 lncRNA downstream 130964 13389862 ~ 13390838 (+) False XLOC_025129
TCONS_00052618 lncRNA downstream 131046 13389944 ~ 13406082 (+) True XLOC_025129
TCONS_00052619 lncRNA downstream 147639 13406537 ~ 13413213 (+) True XLOC_025131
TCONS_00052620 lncRNA downstream 217974 13476872 ~ 13477873 (+) True XLOC_025134
TCONS_00049654 mRNA upstream 380210 12861158 ~ 12862480 (+) True XLOC_025124
TCONS_00049653 mRNA upstream 392293 12848123 ~ 12850397 (+) True XLOC_025123
TCONS_00049652 mRNA upstream 405047 12835370 ~ 12837643 (+) True XLOC_025121
TCONS_00049651 mRNA upstream 410171 12829566 ~ 12832519 (+) True XLOC_025120
TCONS_00049650 mRNA upstream 411363 12828824 ~ 12831327 (+) False XLOC_025120
TCONS_00049659 mRNA downstream 73972 13332870 ~ 13347096 (+) True XLOC_025127
TCONS_00049662 mRNA downstream 182002 13440900 ~ 13446085 (+) True XLOC_025132
TCONS_00049663 mRNA downstream 210806 13469704 ~ 13473197 (+) True XLOC_025133
TCONS_00049664 mRNA downstream 223644 13482542 ~ 13489945 (+) True XLOC_025135
TCONS_00049665 mRNA downstream 253086 13511984 ~ 13521115 (+) True XLOC_025136
TCONS_00049628 other upstream 1295733 11943549 ~ 11946957 (+) True XLOC_025104
TCONS_00049621 other upstream 3079129 10152138 ~ 10163561 (+) True XLOC_025087
TCONS_00049609 other upstream 4200595 9041989 ~ 9042095 (+) True XLOC_025081
TCONS_00049608 other upstream 4201122 9041462 ~ 9041568 (+) True XLOC_025080
TCONS_00049607 other upstream 4201637 9040947 ~ 9041053 (+) True XLOC_025079
TCONS_00049660 other downstream 147328 13406226 ~ 13406323 (+) True XLOC_025130
TCONS_00049661 other downstream 147553 13406451 ~ 13406538 (+) False XLOC_025131
TCONS_00049675 other downstream 589328 13848226 ~ 13857716 (+) False XLOC_025143
TCONS_00049684 other downstream 985768 14244666 ~ 14244784 (+) True XLOC_025148
TCONS_00049690 other downstream 1140327 14399225 ~ 14399652 (+) True XLOC_025154

Expression Profile

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