RNA id: TU1860762


Basic Information

Item Value
RNA id TU1860762
length 563
RNA type TUCP
GC content 0.53
exon number 1
gene id G1626105
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 42255235 ~ 42255797 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaagtgctctttactaacgagttgcggttttgtctcaccagggctgatggttggattcgcgtttatcgtcgaaggaatgagcgttacaccgaggcctgtactctggagtgggatcgatttggaggtggagggtccgtcatggtctagggcggtgtgtcacagcatcatcggactgagcttgttgtcattgcaggcaatctcaacgctgtgcgttacagggaagacatcctcctccctcatgtggtacctttcctgcaggctcatcctgacatgaccctccagcatgacaatgccaccagctatactgctcgttctgtgcgtgatttcctgcaagacaggaatgtcagtgttctgctatggccagcgaagagcccggatctcaatcctattgagcacgtctgggacctgttggatcggagggtgagggctagggccattccccccagacatttccaggaacttgcaggtgtcttggtggaagattggggtaacatctcacagcaagtacTGGCAAATCttatgcagtccatgaggaggagatgcactgcagtacttaatgcagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1860751 lncRNA downstream 3732 42250968 ~ 42251503 (-) True G1626096
TU1860739 lncRNA downstream 22834 42232130 ~ 42232401 (-) True G1626084
TU1860737 lncRNA downstream 25670 42228358 ~ 42229565 (-) True G1626082
TU1860726 lncRNA downstream 39310 42215481 ~ 42215925 (-) True G1626075
TU1860171 lncRNA downstream 158902 42096103 ~ 42096333 (-) True G1625603
TU1860763 lncRNA upstream 368 42256165 ~ 42256668 (-) True G1626106
TU1860764 lncRNA upstream 1429 42257226 ~ 42257477 (-) True G1626107
TU1860768 lncRNA upstream 8774 42264571 ~ 42264782 (-) True G1626111
TU1860769 lncRNA upstream 10572 42266369 ~ 42266860 (-) True G1626112
TU1860770 lncRNA upstream 11123 42266920 ~ 42267128 (-) True G1626113
XM_021574345.2 mRNA downstream 42216 42190271 ~ 42213019 (-) True LOC110497894
XM_021574346.2 mRNA downstream 55601 42190271 ~ 42199634 (-) False LOC110497894
XM_036954849.1 mRNA downstream 65738 42185201 ~ 42189497 (-) True LOC118941476
XM_036954848.1 mRNA downstream 65980 42185201 ~ 42189255 (-) False LOC118941476
XM_036954846.1 mRNA downstream 66309 42185201 ~ 42188926 (-) False LOC118941476
XM_036954855.1 mRNA upstream 63299 42319096 ~ 42339373 (-) False LOC110497897
XM_036954854.1 mRNA upstream 63299 42319096 ~ 42339822 (-) False LOC110497897
XM_036954856.1 mRNA upstream 64141 42319938 ~ 42339375 (-) False LOC110497897
XR_005037740.1 mRNA upstream 64496 42320293 ~ 42339375 (-) False LOC110497897
NM_001124388.1 mRNA upstream 95600 42351397 ~ 42383265 (-) True ngb1
TU1859988 other downstream 404802 41846255 ~ 41850433 (-) True G1625428
TU1859580 other downstream 1060476 41194433 ~ 41194759 (-) True G1625066
TU1859566 other downstream 1092823 41144107 ~ 41162412 (-) True LOC110497865
TU1859437 other downstream 1175136 41069763 ~ 41080099 (-) True LOC110497863
TU1859319 other downstream 1559474 40695475 ~ 40695761 (-) False LOC110498350
TU1860882 other upstream 210028 42465825 ~ 42470702 (-) False LOC110498355
TU1860906 other upstream 384652 42640449 ~ 42641273 (-) True G1626232
TU1861008 other upstream 503497 42759294 ~ 42838434 (-) True G1626324
TU1861812 other upstream 1152930 43408727 ~ 43409109 (-) True G1627068
TU1865759 other upstream 3747968 46003765 ~ 46005877 (-) False LOC110498001

Expression Profile