RNA id: TU1860314


Basic Information

Item Value
RNA id TU1860314
length 205
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G1625718
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 42266754 ~ 42266958 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaagacacctgtccacacactcaatcaagcagactccaacctctccacaatggccaagaccagagagctgtgtaaggacatcagggttaaaattgtagacctgcacaaggctgggatgggctacaggacaataggcaagcagcttggtgagaaggcaacaactgttggcgcaattattagaaaatggaataagatcaagatgacg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1860310 lncRNA upstream 10717 42255779 ~ 42256037 (+) True G1625714
TU1860309 lncRNA upstream 11112 42255381 ~ 42255642 (+) True G1625713
TU1860284 lncRNA upstream 21375 42245118 ~ 42245379 (+) True G1625702
TU1860281 lncRNA upstream 27645 42238827 ~ 42239109 (+) True G1625699
TU1860273 lncRNA upstream 35942 42228481 ~ 42230812 (+) False LOC110497895
TU1860360 lncRNA downstream 70540 42337498 ~ 42337713 (+) True G1625761
TU1860291 lncRNA downstream 107026 42373984 ~ 42375173 (+) False LOC110497898
TU1860292 lncRNA downstream 107026 42373984 ~ 42374828 (+) True LOC110497898
TU1860432 lncRNA downstream 208082 42475040 ~ 42475248 (+) True G1625822
TU1860433 lncRNA downstream 208574 42475532 ~ 42475793 (+) True G1625823
XR_002469738.2 mRNA upstream 36276 42228256 ~ 42230478 (+) False LOC110497895
XR_005037738.1 mRNA upstream 104467 42158731 ~ 42162287 (+) False LOC110497893
XR_002469735.2 mRNA upstream 104467 42158736 ~ 42162287 (+) False LOC110497893
XR_002469737.2 mRNA upstream 104467 42158783 ~ 42162287 (+) True LOC110497893
XM_021574341.2 mRNA upstream 237303 41995059 ~ 42029451 (+) False tmem260
XM_036954850.1 mRNA downstream 10020 42276978 ~ 42297442 (+) False LOC110497896
XM_036954851.1 mRNA downstream 10337 42277295 ~ 42300523 (+) False LOC110497896
XM_036954853.1 mRNA downstream 10340 42277298 ~ 42297816 (+) False LOC110497896
XM_021574347.2 mRNA downstream 10341 42277299 ~ 42300523 (+) False LOC110497896
XM_036954852.1 mRNA downstream 21075 42288033 ~ 42300523 (+) True LOC110497896
TU1860306 other upstream 15183 42250731 ~ 42251571 (+) True G1625710
TU1858946 other upstream 229636 42036328 ~ 42037118 (+) True G1624524
TU1858998 other upstream 230810 42035353 ~ 42035944 (+) True G1624565
TU1858971 other upstream 237248 42024608 ~ 42029506 (+) True tmem260
TU1858990 other upstream 256424 42009961 ~ 42010330 (+) True G1624560
TU1861490 other downstream 1044882 43311840 ~ 43407127 (+) True LOC110497931
TU1862104 other downstream 1547768 43814726 ~ 43816301 (+) False G1627319
TU1862103 other downstream 1547800 43814758 ~ 43816301 (+) False G1627319
TU1862108 other downstream 1547800 43814758 ~ 43816501 (+) True G1627319
TU1862932 other downstream 2147364 44414322 ~ 44448672 (+) True G1628073

Expression Profile