RNA id: TU1861132


Basic Information

Item Value
RNA id TU1861132
length 228
lncRNA type intronic
GC content 0.36
exon number 1
gene id G1626440
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 42863353 ~ 42863580 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGTAGAGGAGTGCTGGACGGATAAGATCCCACTGGTCCGAGAGCAATGAGAGGCTTGTGATGAGAACATGTCTGAAGGGTAATGTTCTAAACATTATGCATATACCTAAACATCACTTTCATTTTATTTGTGTGTGAGAAAATATCTATTTGGGCAAAACAATCATTTAACATCCTATAGGATAGAATATTTTAGGATACTGAAATAGTCTTACTTTTTACATGAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1861126 lncRNA upstream 3449 42859686 ~ 42859904 (+) True G1626434
TU1861122 lncRNA upstream 7795 42855339 ~ 42855558 (+) True G1626430
TU1861115 lncRNA upstream 12193 42850886 ~ 42851160 (+) True G1626423
TU1860633 lncRNA upstream 53693 42806815 ~ 42809660 (+) True LOC110497923
TU1860583 lncRNA upstream 164499 42698630 ~ 42698854 (+) True G1625943
TU1861149 lncRNA downstream 12006 42875586 ~ 42875807 (+) True LOC110498356
TU1861156 lncRNA downstream 16671 42880251 ~ 42881091 (+) True G1626464
TU1861176 lncRNA downstream 31994 42895574 ~ 42895786 (+) True G1626484
TU1861192 lncRNA downstream 46990 42910570 ~ 42910953 (+) True G1626500
TU1861196 lncRNA downstream 48091 42911671 ~ 42911977 (+) True G1626504
XR_005037745.1 mRNA upstream 51875 42790955 ~ 42811478 (+) False LOC110497923
XM_036954870.1 mRNA upstream 53278 42790955 ~ 42810075 (+) False LOC110497923
XM_036954871.1 mRNA upstream 53278 42791614 ~ 42810075 (+) False LOC110497923
XM_021574391.2 mRNA upstream 97603 42671240 ~ 42765750 (+) False ttll5
XM_036954877.1 mRNA downstream 118665 42982245 ~ 43039659 (+) False LOC110497924
XM_036954878.1 mRNA downstream 118665 42982245 ~ 43039659 (+) False LOC110497924
XM_036954875.1 mRNA downstream 118666 42982246 ~ 43039659 (+) False LOC110497924
XM_036954876.1 mRNA downstream 118666 42982246 ~ 43039659 (+) False LOC110497924
XM_036954873.1 mRNA downstream 123466 42987046 ~ 43039659 (+) False LOC110497924
TU1860306 other upstream 611782 42250731 ~ 42251571 (+) True G1625710
TU1858946 other upstream 826235 42036328 ~ 42037118 (+) True G1624524
TU1858998 other upstream 827409 42035353 ~ 42035944 (+) True G1624565
TU1858971 other upstream 833847 42024608 ~ 42029506 (+) True tmem260
TU1858990 other upstream 853023 42009961 ~ 42010330 (+) True G1624560
TU1861490 other downstream 448260 43311840 ~ 43407127 (+) True LOC110497931
TU1862104 other downstream 951146 43814726 ~ 43816301 (+) False G1627319
TU1862103 other downstream 951178 43814758 ~ 43816301 (+) False G1627319
TU1862108 other downstream 951178 43814758 ~ 43816501 (+) True G1627319
TU1862932 other downstream 1550742 44414322 ~ 44448672 (+) True G1628073

Expression Profile