RNA id: TU1861176


Basic Information

Item Value
RNA id TU1861176
length 213
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G1626484
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 42895574 ~ 42895786 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaattgagctcaggtgcttcctgtttccattgatcattcttgagatgtttctacctgtggtaaattcaattgattggacatgatttggaatggcacacacctgtctacataaggtcccacagttgacagtgcatgtcagagcaaaaaccaagccatgaggtcgaaggaattgtttgtagagcaccgaaacaggattgtgttgaggcacagatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1861156 lncRNA upstream 14483 42880251 ~ 42881091 (+) True G1626464
TU1861149 lncRNA upstream 19767 42875586 ~ 42875807 (+) True LOC110498356
TU1861132 lncRNA upstream 31994 42863353 ~ 42863580 (+) True G1626440
TU1861126 lncRNA upstream 35670 42859686 ~ 42859904 (+) True G1626434
TU1861122 lncRNA upstream 40016 42855339 ~ 42855558 (+) True G1626430
TU1861192 lncRNA downstream 14784 42910570 ~ 42910953 (+) True G1626500
TU1861196 lncRNA downstream 15885 42911671 ~ 42911977 (+) True G1626504
TU1861203 lncRNA downstream 22200 42917986 ~ 42918218 (+) True G1626511
TU1861219 lncRNA downstream 40516 42936302 ~ 42936556 (+) True G1626527
TU1861230 lncRNA downstream 51278 42947064 ~ 42947279 (+) True G1626538
XM_036953822.1 mRNA upstream 18232 42862652 ~ 42877342 (+) False LOC110498356
XR_005037745.1 mRNA upstream 84096 42790955 ~ 42811478 (+) False LOC110497923
XM_036954870.1 mRNA upstream 85499 42790955 ~ 42810075 (+) False LOC110497923
XM_036954871.1 mRNA upstream 85499 42791614 ~ 42810075 (+) False LOC110497923
XM_021574392.2 mRNA upstream 129824 42671241 ~ 42765750 (+) True ttll5
XM_036954877.1 mRNA downstream 86459 42982245 ~ 43039659 (+) False LOC110497924
XM_036954878.1 mRNA downstream 86459 42982245 ~ 43039659 (+) False LOC110497924
XM_036954875.1 mRNA downstream 86460 42982246 ~ 43039659 (+) False LOC110497924
XM_036954876.1 mRNA downstream 86460 42982246 ~ 43039659 (+) False LOC110497924
XM_036954873.1 mRNA downstream 91260 42987046 ~ 43039659 (+) False LOC110497924
TU1860306 other upstream 644003 42250731 ~ 42251571 (+) True G1625710
TU1858946 other upstream 858456 42036328 ~ 42037118 (+) True G1624524
TU1858998 other upstream 859630 42035353 ~ 42035944 (+) True G1624565
TU1858971 other upstream 866068 42024608 ~ 42029506 (+) True tmem260
TU1858990 other upstream 885244 42009961 ~ 42010330 (+) True G1624560
TU1861490 other downstream 416054 43311840 ~ 43407127 (+) True LOC110497931
TU1862104 other downstream 918940 43814726 ~ 43816301 (+) False G1627319
TU1862103 other downstream 918972 43814758 ~ 43816301 (+) False G1627319
TU1862108 other downstream 918972 43814758 ~ 43816501 (+) True G1627319
TU1862932 other downstream 1518536 44414322 ~ 44448672 (+) True G1628073

Expression Profile