RNA id: TU1862104


Basic Information

Item Value
RNA id TU1862104
length 1576
RNA type TUCP
GC content 0.43
exon number 1
gene id G1627319
representative False

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 43814593 ~ 43816501 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATCTTTAATAGATATAAACATTTGTATACATCACAGCTCAAAGGAAAGATCATCACATGCTGTAAAACATGAATGAAGGTGCAAATTATGATGAGCATCAGAATCCTttgttatatacagggtgtacagtGTCAGAACACACGGGAAAGCTTGGAGGTTTAATAGTACAACTGACTGTAGACATGGAGGGTCTACCAAGTCGCACCATTAACAGGTGTCAGGTCTCCCTTCTAAGCAGACCAATGGTCAGGTTGGACTCACTAATAGACTTACAGAGGACTGTAAACTGGCATTTCAGGATGTACATAACCTCTTTATATGGCATGGCATACAGTAGTGATTTCATCTACAGAGAGTAGTAAAGGATCACATGTGGCACCAGAGGCCTTCTAAAACGCTGCGGACCAGGATCGAGTATAGTACGTATTGCCATGTAATCTGACATGTTATTATCACAAGGTGCCCCTGTGGATCCAAAACCGCAGCCAGGCAAGGAAGGAACCATACCAATATTCTGGTAGGATATTAAAATAGATCAAGAAGAATTAATATCGTCACTATGAAGTTCATTGAACAGTAACCCTCACCTTCCAGTCGTCCACCCAGACAGCCCAGTTGTTTTCACACAGAAACCAACAGTACAATCTGGTACTACTGCATCCAGTAAGCCCATTTTACTCTCCTGAAATGAGGTCATTCCATAGAGAGACATGGGGAAGTGGTAAAACGATATCCGTTTTTTTTCAGTGGTAACATTTCTGTtcatatatatttacaaaataaattgTTGAACAGCTGTAGTTGATGATGAATTGCCATCATTCTTCAACACAGTGGATGTGTAATACCGCAACCACTTACTGCTCAGTGAGGTTttataggaggagagagaggatggatagagagaaagactgagagaTCAACAGCATGCAATCTTTTCTTTAGGATTTACTGGCACTGTACTGTAGTGTCCCTGCATGTCTGACAGAGATGTATTAACTTCCCTGGGCTATGATGATCATGACAATAATAAGCTTGGCGGATCAGTTCATGATGGGACCGTTGAAGACCAAAGTGATTCAGTTCCTGTTGATCATATAGCATTTAGATCCACTGTGAATCGGTCCATGTCAATAGCAGAATCACAGTTAATGTAGAAGGAATCAAAGACCAACTCCTGTGGTTCTGAGCATCCATCGTGTGAATCAGTTTAAGTTTGAGTGTGTTGTGGTCACGTGTGTTCAGGTGCTCCTCCTGTCTACTGCACATAGACAGAGTCAGTTCATGTCGATGGTGTTGAAGACCCACTCTGTGAACTTCTTGAGCTTGGCCGAGGCGCTGTAGGACTCCTCGTGGAGCCGCTGGTTGTGCTCTCTCAGGCTCTGTATCTGGGCCTGCAGGGACACCTTGGTATCCTTCTCCTGGACACACACATAGGGGGAGTCATCAATAACACAGAGAGGAGTGGAAAGCTCTCTTTACTCTCTAGTACTGTCCTCAGGAGATATACAGGGCAGCTAAAACCAGGAGGCAGAGTAGTAAATGCAGATGCTGAATGGGTACTGCTGATATACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1862158 lncRNA upstream 1649 43812871 ~ 43813077 (+) True G1627367
TU1862144 lncRNA upstream 22280 43791698 ~ 43792446 (+) True G1627353
TU1862033 lncRNA upstream 179526 43634641 ~ 43635200 (+) True LOC110497936
TU1862032 lncRNA upstream 179703 43634641 ~ 43635023 (+) False LOC110497936
TU1861972 lncRNA upstream 218407 43595954 ~ 43596319 (+) True G1627212
TU1862159 lncRNA downstream 1154 43817455 ~ 43817909 (+) True G1627368
TU1862161 lncRNA downstream 2616 43818917 ~ 43819117 (+) True G1627370
TU1862165 lncRNA downstream 11674 43827975 ~ 43828205 (+) True G1627374
TU1862180 lncRNA downstream 34113 43850414 ~ 43850717 (+) True G1627389
TU1862181 lncRNA downstream 34505 43850806 ~ 43859650 (+) True G1627390
XM_036954885.1 mRNA upstream 79318 43695222 ~ 43735408 (+) False LOC110498362
XM_036954884.1 mRNA upstream 79318 43697125 ~ 43735408 (+) True LOC110498362
XM_021574417.2 mRNA upstream 119795 43684258 ~ 43694931 (+) True LOC110497938
LOC110498580 mRNA upstream 171248 43638479 ~ 43643478 (+) True LOC110498580
XM_021574415.2 mRNA upstream 179703 43628125 ~ 43635023 (+) False LOC110497936
XM_021574434.2 mRNA downstream 110771 43927072 ~ 43931372 (+) False LOC110497947
XM_021574435.2 mRNA downstream 110771 43927072 ~ 43931372 (+) True LOC110497947
XR_002469746.2 mRNA downstream 128324 43944625 ~ 43946674 (+) True LOC110497948
XM_021574439.2 mRNA downstream 347731 44164032 ~ 44167404 (+) False zgc:194887
XM_036954898.1 mRNA downstream 347774 44164075 ~ 44167404 (+) True zgc:194887
TU1861490 other upstream 407599 43311840 ~ 43407127 (+) True LOC110497931
TU1860306 other upstream 1563155 42250731 ~ 42251571 (+) True G1625710
TU1858946 other upstream 1777608 42036328 ~ 42037118 (+) True G1624524
TU1858998 other upstream 1778782 42035353 ~ 42035944 (+) True G1624565
TU1858971 other upstream 1785220 42024608 ~ 42029506 (+) True tmem260
TU1862932 other downstream 598021 44414322 ~ 44448672 (+) True G1628073
TU1863373 other downstream 867061 44683362 ~ 44748925 (+) True G1628486
TU1863375 other downstream 872081 44688382 ~ 44747446 (+) True G1628488
TU1863440 other downstream 1013621 44829922 ~ 44886234 (+) True G1628550
TU1863586 other downstream 1070570 44886871 ~ 44887173 (+) True G1628689

Expression Profile