RNA id: TU1862241


Basic Information

Item Value
RNA id TU1862241
length 536
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G1627446
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 43941860 ~ 43942395 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gctgacagacagtgacacattgaataccgccttgcacacttaCCTGCgtctagctgatatagggtgtaattattagtccaacagttgcaaacgagagtttatattggacaaattcaggtatgttttgttccgtttgcttccgtttttAAGAAACAtgtttcaacagaatcggcagaatgaatacacccctgatcacttGTAAACAAAGTTCACTTTCATTGCAGtaacgttgtattccttcttgcgCTCTCTTTCTATCCCCTTTTCCCCTCGgttgtggacttcaatgaacaACATGTCAGCTGTATGTGACCCTGGTGAAAAAAACCTTATCAAGCCAAACCAAATTGTTGTCatcatattagctaaagtaaggtcgtagtcaacatagctaatagaacggacgcgttagtaaacctgttacaatcatgtagtaacgttacagtgtacagtcagtaaactgttcaactattgtctttctcctTCTTTGTCTTTGAGTCAACTAATCACCagattttatgcactgcagtgctagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1862181 lncRNA upstream 82210 43850806 ~ 43859650 (+) True G1627390
TU1862180 lncRNA upstream 91143 43850414 ~ 43850717 (+) True G1627389
TU1862165 lncRNA upstream 113655 43827975 ~ 43828205 (+) True G1627374
TU1862161 lncRNA upstream 122743 43818917 ~ 43819117 (+) True G1627370
TU1862159 lncRNA upstream 123951 43817455 ~ 43817909 (+) True G1627368
TU1862338 lncRNA downstream 146473 44088868 ~ 44089100 (+) True G1627537
TU1862345 lncRNA downstream 156558 44098953 ~ 44099167 (+) True G1627544
TU1862659 lncRNA downstream 179879 44122274 ~ 44122571 (+) True G1627818
TU1862662 lncRNA downstream 181196 44123591 ~ 44123869 (+) True G1627821
TU1862663 lncRNA downstream 182950 44125345 ~ 44125642 (+) True G1627822
XM_021574434.2 mRNA upstream 10488 43927072 ~ 43931372 (+) False LOC110497947
XM_021574435.2 mRNA upstream 10488 43927072 ~ 43931372 (+) True LOC110497947
XM_036954885.1 mRNA upstream 206452 43695222 ~ 43735408 (+) False LOC110498362
XM_036954884.1 mRNA upstream 206452 43697125 ~ 43735408 (+) True LOC110498362
XM_021574417.2 mRNA upstream 246929 43684258 ~ 43694931 (+) True LOC110497938
XR_002469746.2 mRNA downstream 2230 43944625 ~ 43946674 (+) True LOC110497948
XM_021574439.2 mRNA downstream 221637 44164032 ~ 44167404 (+) False zgc:194887
XM_036954898.1 mRNA downstream 221680 44164075 ~ 44167404 (+) True zgc:194887
XM_036954902.1 mRNA downstream 467854 44410249 ~ 44430245 (+) True LOC118941479
XM_036954901.1 mRNA downstream 497747 44440142 ~ 44491973 (+) False LOC110497955
TU1862108 other upstream 125359 43814758 ~ 43816501 (+) True G1627319
TU1862104 other upstream 125559 43814726 ~ 43816301 (+) False G1627319
TU1862103 other upstream 125559 43814758 ~ 43816301 (+) False G1627319
TU1861490 other upstream 534733 43311840 ~ 43407127 (+) True LOC110497931
TU1860306 other upstream 1690289 42250731 ~ 42251571 (+) True G1625710
TU1862932 other downstream 471927 44414322 ~ 44448672 (+) True G1628073
TU1863373 other downstream 740967 44683362 ~ 44748925 (+) True G1628486
TU1863375 other downstream 745987 44688382 ~ 44747446 (+) True G1628488
TU1863440 other downstream 887527 44829922 ~ 44886234 (+) True G1628550
TU1863586 other downstream 944476 44886871 ~ 44887173 (+) True G1628689

Expression Profile