Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00049670 |
| length | 1611 |
| RNA type | mRNA |
| GC content | 0.51 |
| exon number | 5 |
| gene id | XLOC_025140 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007114.7 |
| NCBI id | CM002887.2 |
| chromosome length | 62628489 |
| location | 13624815 ~ 13633331 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0009253 | peptidoglycan catabolic process | biological_process |
| GO:0042742 | defense response to bacterium | biological_process |
| GO:0050830 | defense response to Gram-positive bacterium | biological_process |
| GO:0016045 | detection of bacterium | biological_process |
| GO:0008745 | N-acetylmuramoyl-L-alanine amidase activity | molecular_function |
| GO:0042834 | peptidoglycan binding | molecular_function |
| GO:0008270 | zinc ion binding | molecular_function |
| GO:0016019 | peptidoglycan immune receptor activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-071227-2 | Enables N-acetylmuramoyl-L-alanine amidase activity. Acts upstream of or within defense response to bacterium. Is expressed in several structures, including acinar cell; gill lamella; gut absorptive cell; liver; and pleuroperitoneal region. Orthologous to human PGLYRP2 (peptidoglycan recognition protein 2). |
| ensembl_id | ENSDART00000161451 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00052620 | lncRNA | upstream | 146942 | 13476872 ~ 13477873 (+) | True | XLOC_025134 |
| TCONS_00052619 | lncRNA | upstream | 211602 | 13406537 ~ 13413213 (+) | True | XLOC_025131 |
| TCONS_00052618 | lncRNA | upstream | 218733 | 13389944 ~ 13406082 (+) | True | XLOC_025129 |
| TCONS_00052328 | lncRNA | upstream | 233977 | 13389862 ~ 13390838 (+) | False | XLOC_025129 |
| TCONS_00052617 | lncRNA | upstream | 257307 | 13360703 ~ 13367508 (+) | True | XLOC_025128 |
| TCONS_00052621 | lncRNA | downstream | 394912 | 14028243 ~ 14073770 (+) | True | XLOC_025145 |
| TCONS_00052329 | lncRNA | downstream | 567712 | 14201043 ~ 14202519 (+) | True | XLOC_025147 |
| TCONS_00049683 | lncRNA | downstream | 608788 | 14242119 ~ 14248150 (+) | False | XLOC_025148 |
| TCONS_00052330 | lncRNA | downstream | 610867 | 14244198 ~ 14248538 (+) | False | XLOC_025148 |
| TCONS_00052331 | lncRNA | downstream | 617913 | 14251244 ~ 14254765 (+) | True | XLOC_025149 |
| TCONS_00049668 | mRNA | upstream | 6433 | 13600714 ~ 13618382 (+) | False | XLOC_025139 |
| TCONS_00049669 | mRNA | upstream | 7081 | 13603272 ~ 13617734 (+) | True | XLOC_025139 |
| TCONS_00049667 | mRNA | upstream | 48763 | 13569806 ~ 13576052 (+) | True | XLOC_025138 |
| TCONS_00049666 | mRNA | upstream | 57053 | 13559199 ~ 13567762 (+) | True | XLOC_025137 |
| TCONS_00049665 | mRNA | upstream | 103700 | 13511984 ~ 13521115 (+) | True | XLOC_025136 |
| TCONS_00049671 | mRNA | downstream | 4052 | 13637383 ~ 13684397 (+) | True | XLOC_025141 |
| TCONS_00049672 | mRNA | downstream | 197268 | 13830599 ~ 13837063 (+) | True | XLOC_025142 |
| TCONS_00049673 | mRNA | downstream | 209223 | 13842554 ~ 13877704 (+) | False | XLOC_025143 |
| TCONS_00049674 | mRNA | downstream | 209250 | 13842581 ~ 13855721 (+) | False | XLOC_025143 |
| TCONS_00049676 | mRNA | downstream | 214895 | 13848226 ~ 13879635 (+) | False | XLOC_025143 |
| TCONS_00049661 | other | upstream | 218277 | 13406451 ~ 13406538 (+) | False | XLOC_025131 |
| TCONS_00049660 | other | upstream | 218492 | 13406226 ~ 13406323 (+) | True | XLOC_025130 |
| TCONS_00049628 | other | upstream | 1677858 | 11943549 ~ 11946957 (+) | True | XLOC_025104 |
| TCONS_00049621 | other | upstream | 3461254 | 10152138 ~ 10163561 (+) | True | XLOC_025087 |
| TCONS_00049609 | other | upstream | 4582720 | 9041989 ~ 9042095 (+) | True | XLOC_025081 |
| TCONS_00049675 | other | downstream | 214895 | 13848226 ~ 13857716 (+) | False | XLOC_025143 |
| TCONS_00049684 | other | downstream | 611335 | 14244666 ~ 14244784 (+) | True | XLOC_025148 |
| TCONS_00049690 | other | downstream | 765894 | 14399225 ~ 14399652 (+) | True | XLOC_025154 |
| TCONS_00049704 | other | downstream | 1041438 | 14674769 ~ 14684603 (+) | True | XLOC_025161 |
| TCONS_00049719 | other | downstream | 2057972 | 15691303 ~ 15719823 (+) | True | XLOC_025174 |
