RNA id: TU1862345


Basic Information

Item Value
RNA id TU1862345
length 215
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G1627544
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 44098953 ~ 44099167 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTCAATATGCtctgttaggttctaatttttcagagtaaataactcacggacactagagaagcttaaccaagttgaattcttcccaaggggtcgttacagttgtaattcAGACAAAGACATGGCTTCCCCCGTGGTGGTATTCATACCCAACTttgggtggagtctcctccttATCTCTAAAAATTGCATCCTTCTTGCTAAGCAGGGAACTAAG

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1862338 lncRNA upstream 9853 44088868 ~ 44089100 (+) True G1627537
TU1862241 lncRNA upstream 156558 43941860 ~ 43942395 (+) True G1627446
TU1862181 lncRNA upstream 239303 43850806 ~ 43859650 (+) True G1627390
TU1862180 lncRNA upstream 248236 43850414 ~ 43850717 (+) True G1627389
TU1862165 lncRNA upstream 270748 43827975 ~ 43828205 (+) True G1627374
TU1862659 lncRNA downstream 23107 44122274 ~ 44122571 (+) True G1627818
TU1862662 lncRNA downstream 24424 44123591 ~ 44123869 (+) True G1627821
TU1862663 lncRNA downstream 26178 44125345 ~ 44125642 (+) True G1627822
TU1862666 lncRNA downstream 29848 44129015 ~ 44129467 (+) True G1627825
TU1862668 lncRNA downstream 30956 44130123 ~ 44130347 (+) True G1627827
XR_002469746.2 mRNA upstream 152279 43944625 ~ 43946674 (+) True LOC110497948
XM_021574434.2 mRNA upstream 167581 43927072 ~ 43931372 (+) False LOC110497947
XM_021574435.2 mRNA upstream 167581 43927072 ~ 43931372 (+) True LOC110497947
XM_036954885.1 mRNA upstream 363545 43695222 ~ 43735408 (+) False LOC110498362
XM_021574439.2 mRNA downstream 64865 44164032 ~ 44167404 (+) False zgc:194887
XM_036954898.1 mRNA downstream 64908 44164075 ~ 44167404 (+) True zgc:194887
XM_036954902.1 mRNA downstream 311082 44410249 ~ 44430245 (+) True LOC118941479
XM_036954901.1 mRNA downstream 340975 44440142 ~ 44491973 (+) False LOC110497955
XR_005037748.1 mRNA downstream 340988 44440155 ~ 44501752 (+) False LOC110497955
TU1862108 other upstream 282452 43814758 ~ 43816501 (+) True G1627319
TU1862104 other upstream 282652 43814726 ~ 43816301 (+) False G1627319
TU1862103 other upstream 282652 43814758 ~ 43816301 (+) False G1627319
TU1861490 other upstream 691826 43311840 ~ 43407127 (+) True LOC110497931
TU1860306 other upstream 1847382 42250731 ~ 42251571 (+) True G1625710
TU1862932 other downstream 315155 44414322 ~ 44448672 (+) True G1628073
TU1863373 other downstream 584195 44683362 ~ 44748925 (+) True G1628486
TU1863375 other downstream 589215 44688382 ~ 44747446 (+) True G1628488
TU1863440 other downstream 730755 44829922 ~ 44886234 (+) True G1628550
TU1863586 other downstream 787704 44886871 ~ 44887173 (+) True G1628689

Expression Profile