RNA id: TU1862663


Basic Information

Item Value
RNA id TU1862663
length 298
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G1627822
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 44125345 ~ 44125642 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATATTACAGTGTCTGACACAGCCCTGAGAAGAGTAGCAGTAGAATGAATAGGCGAGCTGTCTCCAGCATCGATTGTACATTTCGCTGTGTTGGAGAAGAACATCAGGCACAGACTACTCTTACTGGAAATGAGAAGGCTGTTAAACAAGAATCGTTTGGAGTTAAATGGACCCAAACGGAGACCTCTTATGCCAAAAGGCATGCCCCAGTACTGCCTGCCAACAACAGCCAGTTTGCTAGTATACCCTGTTGTCACACAGCCCCCTATGCCTTTTAGTGTCCAGGCTCAAAGTTAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1862662 lncRNA upstream 1476 44123591 ~ 44123869 (+) True G1627821
TU1862659 lncRNA upstream 2774 44122274 ~ 44122571 (+) True G1627818
TU1862345 lncRNA upstream 26178 44098953 ~ 44099167 (+) True G1627544
TU1862338 lncRNA upstream 36245 44088868 ~ 44089100 (+) True G1627537
TU1862241 lncRNA upstream 182950 43941860 ~ 43942395 (+) True G1627446
TU1862666 lncRNA downstream 3373 44129015 ~ 44129467 (+) True G1627825
TU1862668 lncRNA downstream 4481 44130123 ~ 44130347 (+) True G1627827
TU1862674 lncRNA downstream 7588 44133230 ~ 44134057 (+) True G1627831
TU1862677 lncRNA downstream 14853 44140495 ~ 44141631 (+) True G1627834
TU1862672 lncRNA downstream 19175 44144817 ~ 44159762 (+) False G1627830
XR_002469746.2 mRNA upstream 178671 43944625 ~ 43946674 (+) True LOC110497948
XM_021574434.2 mRNA upstream 193973 43927072 ~ 43931372 (+) False LOC110497947
XM_021574435.2 mRNA upstream 193973 43927072 ~ 43931372 (+) True LOC110497947
XM_036954885.1 mRNA upstream 389937 43695222 ~ 43735408 (+) False LOC110498362
XM_021574439.2 mRNA downstream 38390 44164032 ~ 44167404 (+) False zgc:194887
XM_036954898.1 mRNA downstream 38433 44164075 ~ 44167404 (+) True zgc:194887
XM_036954902.1 mRNA downstream 284607 44410249 ~ 44430245 (+) True LOC118941479
XM_036954901.1 mRNA downstream 314500 44440142 ~ 44491973 (+) False LOC110497955
XR_005037748.1 mRNA downstream 314513 44440155 ~ 44501752 (+) False LOC110497955
TU1862108 other upstream 308844 43814758 ~ 43816501 (+) True G1627319
TU1862104 other upstream 309044 43814726 ~ 43816301 (+) False G1627319
TU1862103 other upstream 309044 43814758 ~ 43816301 (+) False G1627319
TU1861490 other upstream 718218 43311840 ~ 43407127 (+) True LOC110497931
TU1860306 other upstream 1873774 42250731 ~ 42251571 (+) True G1625710
TU1862932 other downstream 288680 44414322 ~ 44448672 (+) True G1628073
TU1863373 other downstream 557720 44683362 ~ 44748925 (+) True G1628486
TU1863375 other downstream 562740 44688382 ~ 44747446 (+) True G1628488
TU1863440 other downstream 704280 44829922 ~ 44886234 (+) True G1628550
TU1863586 other downstream 761229 44886871 ~ 44887173 (+) True G1628689

Expression Profile