RNA id: TU1862666


Basic Information

Item Value
RNA id TU1862666
length 453
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G1627825
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 44129015 ~ 44129467 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gctgcagAGTCtaccaataagaatgtggtgattgacagagtcgaaagccttggccaggtcgatgaagacggctgcacagtaatgtttcctatcaatggcagttatgatgtcgtttaggaccttgagcgtggctgaggtgcacccatgaccagctctgaaaccagattgtatagcggagaaggtacagtgggattcgaaatggtcggtaatctgtttgttaacttggcttttgaagaccttagaaagacagggtaggatagatataggtctgtagcagtttgggtctagagtgtcaccccctttgaagagggggataaccgcggcagctttccaatctttgggaatctcagacgatacgagaggttgaacaggctagtaataggggttgcaacaatttcagcagataattttagaatgaGAGGgtgcagattgtctagcctggctgatttgtag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1862663 lncRNA upstream 3373 44125345 ~ 44125642 (+) True G1627822
TU1862662 lncRNA upstream 5146 44123591 ~ 44123869 (+) True G1627821
TU1862659 lncRNA upstream 6444 44122274 ~ 44122571 (+) True G1627818
TU1862345 lncRNA upstream 29848 44098953 ~ 44099167 (+) True G1627544
TU1862338 lncRNA upstream 39915 44088868 ~ 44089100 (+) True G1627537
TU1862668 lncRNA downstream 656 44130123 ~ 44130347 (+) True G1627827
TU1862674 lncRNA downstream 3763 44133230 ~ 44134057 (+) True G1627831
TU1862677 lncRNA downstream 11028 44140495 ~ 44141631 (+) True G1627834
TU1862672 lncRNA downstream 15350 44144817 ~ 44159762 (+) False G1627830
TU1862671 lncRNA downstream 26371 44155838 ~ 44157118 (+) True G1627830
XR_002469746.2 mRNA upstream 182341 43944625 ~ 43946674 (+) True LOC110497948
XM_021574434.2 mRNA upstream 197643 43927072 ~ 43931372 (+) False LOC110497947
XM_021574435.2 mRNA upstream 197643 43927072 ~ 43931372 (+) True LOC110497947
XM_036954885.1 mRNA upstream 393607 43695222 ~ 43735408 (+) False LOC110498362
XM_021574439.2 mRNA downstream 34565 44164032 ~ 44167404 (+) False zgc:194887
XM_036954898.1 mRNA downstream 34608 44164075 ~ 44167404 (+) True zgc:194887
XM_036954902.1 mRNA downstream 280782 44410249 ~ 44430245 (+) True LOC118941479
XM_036954901.1 mRNA downstream 310675 44440142 ~ 44491973 (+) False LOC110497955
XR_005037748.1 mRNA downstream 310688 44440155 ~ 44501752 (+) False LOC110497955
TU1862108 other upstream 312514 43814758 ~ 43816501 (+) True G1627319
TU1862104 other upstream 312714 43814726 ~ 43816301 (+) False G1627319
TU1862103 other upstream 312714 43814758 ~ 43816301 (+) False G1627319
TU1861490 other upstream 721888 43311840 ~ 43407127 (+) True LOC110497931
TU1860306 other upstream 1877444 42250731 ~ 42251571 (+) True G1625710
TU1862932 other downstream 284855 44414322 ~ 44448672 (+) True G1628073
TU1863373 other downstream 553895 44683362 ~ 44748925 (+) True G1628486
TU1863375 other downstream 558915 44688382 ~ 44747446 (+) True G1628488
TU1863440 other downstream 700455 44829922 ~ 44886234 (+) True G1628550
TU1863586 other downstream 757404 44886871 ~ 44887173 (+) True G1628689

Expression Profile