RNA id: TU1862674


Basic Information

Item Value
RNA id TU1862674
length 828
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G1627831
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 44133230 ~ 44134057 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCAAACCAGCTTGCTTTTATTTTGCCAAGTAAAAGTGCACATTCCACCAATTCAAAATTATGGCCGGACACACAAgaaaataacatctctgttcaAGATACAGAAATAATTACTTCGGTCAACAAAGGACTTTTAACCGCAAACCTGCTATCTCTGCCATAGACATTAATAAGCACATCGTATTTCACAAATAGGCATGCGATCTGAAGTGACATGTTATTTTCTCCTTGCTAGTTTTTTCCTAGAAAGGGATACATTTTTCACAAAAACACATGAAGTCAACAACAGACAAACGTGAATACCATGTGATACACTCATTAACAGCATGAACTTTGTGCTTACAAAGCAGCCCCCTCTGCTGAAATGAGATCTATGTATTGTCCTCTCATGTAATATACATTACGGTTAGATGATTGAGAGGGAAAACAGCAGAGCTTTCTAGGATTATAAATGGTGGTCATCAATCATAGTAAACAAACACAATGTCTCAAGATATACATTTACAGCAAGTCAACCAGTCCCCCTCCACCCGACAAATTGTACCCTGTGCACCTCAGCACACACAACAGGGTCTCCGCAATATACTGGATAAAGGGTCAAAGTACAGGAACACAGTGGCATAGGGGTCTTTTATCTtcagagtatcttaaataatcccacagcacccccccaatatatgtattttttaacgCCTTTGCCTTTTGTTAACTAACATGCACACTTCTTTTCTTTTCTTACTAGCACTGACTTAAACtaatagctactttattgaggtaaaatgtacttactatgactgaaatacgctacatgaccaaaagtatgtggaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1862668 lncRNA upstream 2883 44130123 ~ 44130347 (+) True G1627827
TU1862666 lncRNA upstream 3763 44129015 ~ 44129467 (+) True G1627825
TU1862663 lncRNA upstream 7588 44125345 ~ 44125642 (+) True G1627822
TU1862662 lncRNA upstream 9361 44123591 ~ 44123869 (+) True G1627821
TU1862659 lncRNA upstream 10659 44122274 ~ 44122571 (+) True G1627818
TU1862677 lncRNA downstream 6438 44140495 ~ 44141631 (+) True G1627834
TU1862672 lncRNA downstream 10760 44144817 ~ 44159762 (+) False G1627830
TU1862671 lncRNA downstream 21781 44155838 ~ 44157118 (+) True G1627830
TU1862688 lncRNA downstream 28541 44162598 ~ 44162957 (+) True G1627845
TU1862680 lncRNA downstream 34017 44168074 ~ 44170132 (+) True G1627837
XR_002469746.2 mRNA upstream 186556 43944625 ~ 43946674 (+) True LOC110497948
XM_021574434.2 mRNA upstream 201858 43927072 ~ 43931372 (+) False LOC110497947
XM_021574435.2 mRNA upstream 201858 43927072 ~ 43931372 (+) True LOC110497947
XM_036954885.1 mRNA upstream 397822 43695222 ~ 43735408 (+) False LOC110498362
XM_021574439.2 mRNA downstream 29975 44164032 ~ 44167404 (+) False zgc:194887
XM_036954898.1 mRNA downstream 30018 44164075 ~ 44167404 (+) True zgc:194887
XM_036954902.1 mRNA downstream 276192 44410249 ~ 44430245 (+) True LOC118941479
XM_036954901.1 mRNA downstream 306085 44440142 ~ 44491973 (+) False LOC110497955
XR_005037748.1 mRNA downstream 306098 44440155 ~ 44501752 (+) False LOC110497955
TU1862108 other upstream 316729 43814758 ~ 43816501 (+) True G1627319
TU1862104 other upstream 316929 43814726 ~ 43816301 (+) False G1627319
TU1862103 other upstream 316929 43814758 ~ 43816301 (+) False G1627319
TU1861490 other upstream 726103 43311840 ~ 43407127 (+) True LOC110497931
TU1860306 other upstream 1881659 42250731 ~ 42251571 (+) True G1625710
TU1862932 other downstream 280265 44414322 ~ 44448672 (+) True G1628073
TU1863373 other downstream 549305 44683362 ~ 44748925 (+) True G1628486
TU1863375 other downstream 554325 44688382 ~ 44747446 (+) True G1628488
TU1863440 other downstream 695865 44829922 ~ 44886234 (+) True G1628550
TU1863586 other downstream 752814 44886871 ~ 44887173 (+) True G1628689

Expression Profile