RNA id: TU1862688


Basic Information

Item Value
RNA id TU1862688
length 360
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G1627845
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 44162598 ~ 44162957 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tatgaggttggaataataatgTGAAATTGTGGAAATGataataatgcccttttagtgtaagagctgtttgaaaagactgacATTTCTGactgttttagtgggatggggtTTTGGTCTTACATGGTACtatcaccatgcggtaaattagttaatagaccaatgagAAAGAGGGTTCCAAACATCTCTGCCAATGACAGCTAATTTCCACTCCAACCACTCCCAGAAAGTCCCAGCAAAGTTCTTGATGAAAgtaattgctctttgctaagaagctatttttgtttctttttgaccattttaattgaaaacaatcacagtaaaagTACTTAGTTGTTACCCATAAGTGATTTGGTATTGAgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1862672 lncRNA upstream 2836 44144817 ~ 44159762 (+) False G1627830
TU1862671 lncRNA upstream 5480 44155838 ~ 44157118 (+) True G1627830
TU1862677 lncRNA upstream 20967 44140495 ~ 44141631 (+) True G1627834
TU1862674 lncRNA upstream 28541 44133230 ~ 44134057 (+) True G1627831
TU1862668 lncRNA upstream 32251 44130123 ~ 44130347 (+) True G1627827
TU1862680 lncRNA downstream 5117 44168074 ~ 44170132 (+) True G1627837
TU1862697 lncRNA downstream 16823 44179780 ~ 44180401 (+) True G1627852
TU1862807 lncRNA downstream 78031 44240988 ~ 44241318 (+) True G1627955
TU1862808 lncRNA downstream 78426 44241383 ~ 44241711 (+) True G1627956
TU1862880 lncRNA downstream 190436 44353393 ~ 44353895 (+) True G1628028
XR_002469746.2 mRNA upstream 215924 43944625 ~ 43946674 (+) True LOC110497948
XM_021574434.2 mRNA upstream 231226 43927072 ~ 43931372 (+) False LOC110497947
XM_021574435.2 mRNA upstream 231226 43927072 ~ 43931372 (+) True LOC110497947
XM_036954885.1 mRNA upstream 427190 43695222 ~ 43735408 (+) False LOC110498362
XM_021574439.2 mRNA downstream 1075 44164032 ~ 44167404 (+) False zgc:194887
XM_036954898.1 mRNA downstream 1118 44164075 ~ 44167404 (+) True zgc:194887
XM_036954902.1 mRNA downstream 247292 44410249 ~ 44430245 (+) True LOC118941479
XM_036954901.1 mRNA downstream 277185 44440142 ~ 44491973 (+) False LOC110497955
XR_005037748.1 mRNA downstream 277198 44440155 ~ 44501752 (+) False LOC110497955
TU1862108 other upstream 346097 43814758 ~ 43816501 (+) True G1627319
TU1862104 other upstream 346297 43814726 ~ 43816301 (+) False G1627319
TU1862103 other upstream 346297 43814758 ~ 43816301 (+) False G1627319
TU1861490 other upstream 755471 43311840 ~ 43407127 (+) True LOC110497931
TU1860306 other upstream 1911027 42250731 ~ 42251571 (+) True G1625710
TU1862932 other downstream 251365 44414322 ~ 44448672 (+) True G1628073
TU1863373 other downstream 520405 44683362 ~ 44748925 (+) True G1628486
TU1863375 other downstream 525425 44688382 ~ 44747446 (+) True G1628488
TU1863440 other downstream 666965 44829922 ~ 44886234 (+) True G1628550
TU1863586 other downstream 723914 44886871 ~ 44887173 (+) True G1628689

Expression Profile