RNA id: TCONS_00049673


Basic Information

Item Value
RNA id TCONS_00049673
length 3305
RNA type mRNA
GC content 0.51
exon number 19
gene id XLOC_025143
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 13842554 ~ 13901074 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGTTGCGGCTCCAGTTTAGCGCACGCTGATTCTCCACAGCGGCAGAGCAGTAGACGGGCGCATCTTCGTCGCTGTATTGACCAACTGGAGCAGCTTTCCTCTGCCACATATAGACCTACACTGCCAAACTGAAGACTTACTTTGTACCCATTATGCCTCCTCCTCTTCGTCATCGCTCCATGCGCATCTTTGTGAACGACGACCGCCATGTGATGGCCAAACACTCGGCCATCTATCCcacccaggaggagctggaggGGGTGCAGAACATGGTGTCCCACACAGAGCGTGCTCTCAAGCTTGTGTCTGATTGGCTGGATGACCAGGAGAAGGGAAATGCCAAAGTAAATGCATTGGACACAGATGGAGAAGGGGATAAGGAGACTGAGCCAAGCACCGGGGAGCAGGCAACCCGTTCCCTGCGCGGAGTCATGCGTGTGGGGCTGGTAGCTAAAGGCCTTCTCCTGAAGGGAGATCTCGACCTGGAGCTTGTGCTGCTGTGCAAAGAGAAACCCACTATCACCCTGCTAAAGAAAGTGTCTGATAACCTGGCTGTGCAGCTAAAGCAGCTCGTCACTGAGGAAAAATATGATGTTAAACCGTGCATCCGCGATGCCACCATTGTCATCAAAAATGCCAAAGAGCCTCCGCTGACCCTCACCATTCACCTGACTTCACCACTCGTGAGGGAGGAGGTTGAGAAGCAGGCTGCTGGAGAAACGCTATCAGTCATCGATCCTCCGGATGTACTGGACAGGCAGAAATGCCTGACTGCCTTGGCGTCCCTCCGCCACGCCAAGTGGTTCCAGGCCAGGGCTAACGGACTGCGCTCCTGTGTGATCGTCATCCGCATCCTAAGGGACCTCTGTGCTCGTGTGCCCACTTGGTCTCCTCTGAGAGGATGGCCCTTAGAACTGCTGTGTGAAAAGGCGATTGGCACTGGGAATCGGCCAATGGGAGCAGGAGAAGCTCTCCGTAGAGTTCTGGAATGTCTTGCATCTGGAATCCTCATGGCTGATGGTTCAGGTATTTGTGACCCTTGTGAAAAGGAGCTAACAGATGCCATCAGTCACGTGGACCGCCAGCAGCGGGAGGACATCACTCAGAGTGCTCAGCATGCTTTGAGGCTTTCGGCTTTTGGACAGCTGCACAAAGTGCTCGGCATGGACCCACTTCCTTCAAAAATGCCCAGAAAACCACGCAGTGATACTCCTATTGACTATACAGttcaAATCCCACCCAGCACAACCTACGTGCCGCCAATGAAACGACCCATAGAGGAGGAGTCCACCGATGAGAAGAATCctaacaagaagaagaagaagctgcAGAAGAAATCTCCAGACGAGAAAGCGGAGCCTGCACAGGCCATGAACGCTCTCATGCGACTGAATCAGCTGAAGCCGGGCCTGCAGTATAAACTCATCTCTCAGACCGGGCCTGTTCATGTTCCTGTGTTCACCATGTCTGTAGAAGTGGATGGAAAGAACTTTGAAGCCTCCGGTCCCTCCAAACGCACTGCAAAACTACACGTTGCTGTCAAGGTCTTGCAAGACATGGGTCTGCCCACAGGAATGGACCAGAAGACCACTGAACTGATGAAGGTGGACGAGCCGGTGAGCACACAGGAGACTTTGCCCCCAGTCATCAAAATGGAGCCAGAACCTGTACCAAttacagaaaccccaactgacgaGAATGCTCGACAGCAGGGACCCATCCTGACCAAACATGGCAAGAACCCAGTGATGGAGCTCAATGAGAAACGCAGAGGGCTGAAGTATGAGCTCATCTCTGAGACCGGGGGAAGCCACGACAAACGCTTCGTCATGGAGGTTGAGATCGATGGACAGAAGTTTCAGGGTACTGGATCCAACAAAAAGGTGGCGAAGGCGTACGCAGCCCTGGCGGCTCTGGAGAAACTGTTCCCAGAAGGCTCCAACTCTGAGgtgaacaagaaaaagaaaatgccTCCAATGcaCACTGGATTTGGGATGGTGAGCGGGCCACCCTCTGACATGATGCCTAATCCAAGGGGCAGAGGAAGAGGACGCGGCAGGGGCCGAGGACGGGGATTCAACAACGGTGGAGGATTTAACCAAGGTGGATATGGGACGTATGGATATGGTGGCAATAACTCTGGCTACAATTTCTATAATAATGGTGGCTCTAATGGCGGATCTGTGGCCTCAAATCAAGGCACAAACCAGTCTTCAGGTGGAGCGGCTGCGACTGGCGGATTCGGCTCATACTATCAGAGCGACAACAGCTACACTTCCCCTGCCCCAACCCCTAAACCTGTAGGCAAAAAGCCACCCATGCACCAAAACACCAAGCCTCAGGCCCCCGGAGTGGGCCAGGGTGGCTCCTACGGTCAGTACAATCAAGGCTACGGGCAGAAGAAGAACTTCGGTCAGGCTCAAGGTGGTGGTGGAGCAGCTGCTGGTGGTGGAGGAAACTTCAATTACAGCACTGCTTATCCCTCACAGGTGACCGGAGGACAGGAGTACAACTATGAAGGTTACAGCAACCAGTCCAACTACAACTCCCAGGGTGGAGCCAACCAGAATTTCGGCGGTAACTCTGCCCCGTACAACAGCGGCCAAGCCGGGTACGGCCGGGGCGATCCCAATATGAACTACCAGTACCGATAAACCTGCCTTCCCACGCGCAGTCCTGAAGCATCATTTCCAAACAAGGAGCATCTTCCTCTTTGATTCTGTTGTTCTTGAGTTTTGGTTTCTGTCGCCAACATCTAAACTAAAGGAAAATAGCAGTCTCTAAACTTTGTGCACAAATAGTGTATCTGCGTATTATTTTGAAGCTTGTTGTATTCTTAATTTGAGTTATTTCATATCTGTGAACGCCCCCCTGAACTACTGCCCTCTAGAGGGACACGAGAACTACATCCCAAAGCGACGCATGTGAGGACCTGATGTTAATATGCAGTGACGGGACACTCTGTCCTTGAGTGATTTTTAACCATTTAAACCTGTATAAATATAAGACGCACCAGTCTCCGTATGTAAATCATTCAGTTTTATTTGATCTTATTTTCTTTCTTGTGTTTGACCATTAGCGCGTCATGTTGTTTCCTGTGACTGTAGGCTTTCCTTTTAAATTATGAATGCACATGTGGCGTTATGTTTTAAATGGTTCTGTGATTGTGTACGTCGTGATGTCAGGTCGTTGTAGCATTCGGCTGTTTTGGGCGGGggacctttattttttattttattttttcccgaATGTTTAAGGAACGTGTGGTGTTTGTAATAAAGGATTTTATTTTGGAGGATCTCTGA

Function

GO:

id name namespace
GO:0051607 defense response to virus biological_process
GO:0005634 nucleus cellular_component
GO:0005730 nucleolus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003677 DNA binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003725 double-stranded RNA binding molecular_function
GO:0003727 single-stranded RNA binding molecular_function
GO:0035925 mRNA 3'-UTR AU-rich region binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-587 Predicted to enable double-stranded RNA binding activity; mRNA 3'-UTR AU-rich region binding activity; and single-stranded RNA binding activity. Predicted to act upstream of or within defense response to virus. Predicted to be located in cytoplasm and nucleolus. Orthologous to human ILF3 (interleukin enhancer binding factor 3).

Ensembl:

ensembl_id ENSDART00000162317

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052620 lncRNA upstream 364681 13476872 ~ 13477873 (+) True XLOC_025134
TCONS_00052619 lncRNA upstream 429341 13406537 ~ 13413213 (+) True XLOC_025131
TCONS_00052618 lncRNA upstream 436472 13389944 ~ 13406082 (+) True XLOC_025129
TCONS_00052328 lncRNA upstream 451716 13389862 ~ 13390838 (+) False XLOC_025129
TCONS_00052617 lncRNA upstream 475046 13360703 ~ 13367508 (+) True XLOC_025128
TCONS_00052621 lncRNA downstream 150539 14028243 ~ 14073770 (+) True XLOC_025145
TCONS_00052329 lncRNA downstream 323339 14201043 ~ 14202519 (+) True XLOC_025147
TCONS_00049683 lncRNA downstream 364415 14242119 ~ 14248150 (+) False XLOC_025148
TCONS_00052330 lncRNA downstream 366494 14244198 ~ 14248538 (+) False XLOC_025148
TCONS_00052331 lncRNA downstream 373540 14251244 ~ 14254765 (+) True XLOC_025149
TCONS_00049672 mRNA upstream 5491 13830599 ~ 13837063 (+) True XLOC_025142
TCONS_00049671 mRNA upstream 158157 13637383 ~ 13684397 (+) True XLOC_025141
TCONS_00049670 mRNA upstream 209223 13624815 ~ 13633331 (+) True XLOC_025140
TCONS_00049668 mRNA upstream 224172 13600714 ~ 13618382 (+) False XLOC_025139
TCONS_00049669 mRNA upstream 224820 13603272 ~ 13617734 (+) True XLOC_025139
TCONS_00049680 mRNA downstream 1742 13879446 ~ 13901074 (+) True XLOC_025143
TCONS_00049681 mRNA downstream 52156 13929860 ~ 13935837 (+) True XLOC_025144
TCONS_00049682 mRNA downstream 279386 14157090 ~ 14189022 (+) True XLOC_025146
TCONS_00049685 mRNA downstream 381411 14259115 ~ 14260797 (+) True XLOC_025150
TCONS_00049686 mRNA downstream 440098 14317802 ~ 14373164 (+) False XLOC_025152
TCONS_00049661 other upstream 436016 13406451 ~ 13406538 (+) False XLOC_025131
TCONS_00049660 other upstream 436231 13406226 ~ 13406323 (+) True XLOC_025130
TCONS_00049628 other upstream 1895597 11943549 ~ 11946957 (+) True XLOC_025104
TCONS_00049621 other upstream 3678993 10152138 ~ 10163561 (+) True XLOC_025087
TCONS_00049609 other upstream 4800459 9041989 ~ 9042095 (+) True XLOC_025081
TCONS_00049684 other downstream 366962 14244666 ~ 14244784 (+) True XLOC_025148
TCONS_00049690 other downstream 521521 14399225 ~ 14399652 (+) True XLOC_025154
TCONS_00049704 other downstream 797065 14674769 ~ 14684603 (+) True XLOC_025161
TCONS_00049719 other downstream 1813599 15691303 ~ 15719823 (+) True XLOC_025174
TCONS_00049721 other downstream 1878019 15755723 ~ 15774178 (+) False XLOC_025176

Expression Profile

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