RNA id: TU1863586


Basic Information

Item Value
RNA id TU1863586
length 303
RNA type TUCP
GC content 0.47
exon number 1
gene id G1628689
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 44886871 ~ 44887173 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtatgtcaatgtgtgtcaaatatgtacagtgcatgccatggcatgatgctgccacaactatgcttcacggtagggatggtgttagacaggtgatgagctatgcctggttttctccagacatagcgctttgcaatcaggccaaagagtacaatttttgtctcatcagaccacagaatcttttgcCTTATGGACCCAGTCTTGCACCTGTCTTTTTGCatactccaggtgtgctgtcatgtgcctttttctcaggagtggcttccgtctttccactctaccataaagcccagattggtgaagtgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1863436 lncRNA upstream 60533 44826022 ~ 44826338 (+) True G1628546
TU1863427 lncRNA upstream 67477 44808359 ~ 44819394 (+) True G1628537
TU1863422 lncRNA upstream 82449 44804115 ~ 44804422 (+) True G1628532
TU1863418 lncRNA upstream 86170 44800392 ~ 44800701 (+) True G1628528
TU1863306 lncRNA upstream 272038 44614533 ~ 44614833 (+) True G1628431
TU1863605 lncRNA downstream 13853 44901026 ~ 44901232 (+) True G1628708
TU1863614 lncRNA downstream 21094 44908267 ~ 44908507 (+) True G1628717
TU1863634 lncRNA downstream 34925 44922098 ~ 44922329 (+) True G1628737
TU1863679 lncRNA downstream 83919 44971092 ~ 44971304 (+) True G1628781
TU1863681 lncRNA downstream 91725 44978898 ~ 45040532 (+) True G1628783
XM_036954904.1 mRNA upstream 326998 44537506 ~ 44559873 (+) True LOC110497958
XR_005037748.1 mRNA upstream 385119 44440155 ~ 44501752 (+) False LOC110497955
XM_036954900.1 mRNA upstream 385119 44440166 ~ 44501752 (+) True LOC110497955
XM_036954901.1 mRNA upstream 394898 44440142 ~ 44491973 (+) False LOC110497955
XM_036954902.1 mRNA upstream 456626 44410249 ~ 44430245 (+) True LOC118941479
NM_001185031.1 mRNA downstream 99499 44986672 ~ 44988391 (+) True cyp1c1
NM_001185032.1 mRNA downstream 104295 44991468 ~ 44993957 (+) True cyp1c2
XM_021574454.2 mRNA downstream 163987 45051160 ~ 45053552 (+) False LOC110497964
XM_021574452.2 mRNA downstream 177064 45064237 ~ 45068205 (+) False LOC110497963
XM_021574453.2 mRNA downstream 177064 45064237 ~ 45068205 (+) True LOC110497963
TU1863440 other upstream 637 44829922 ~ 44886234 (+) True G1628550
TU1863373 other upstream 137946 44683362 ~ 44748925 (+) True G1628486
TU1863375 other upstream 139425 44688382 ~ 44747446 (+) True G1628488
TU1862932 other upstream 438199 44414322 ~ 44448672 (+) True G1628073
TU1862108 other upstream 1070370 43814758 ~ 43816501 (+) True G1627319
TU1863660 other downstream 164026 45051199 ~ 45053551 (+) True LOC110497964
TU1863779 other downstream 299789 45186962 ~ 45194241 (+) True G1628865
TU1863990 other downstream 411326 45298499 ~ 45301327 (+) False LOC110497977
TU1863991 other downstream 411326 45298499 ~ 45301327 (+) True LOC110497977
TU1864078 other downstream 509658 45396831 ~ 45399822 (+) True G1629134

Expression Profile