RNA id: TU1863779


Basic Information

Item Value
RNA id TU1863779
length 2563
RNA type TUCP
GC content 0.43
exon number 2
gene id G1628865
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 45186962 ~ 45194241 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTCACAGTTGTGGACATACCCGGATGTGCAGATTACCAGTCTAACAGGATTCAGTCATGTCACCCAGGCCCTAGCCTGCTCCTTTGGACACTTGTGTAAATCATAATGGATTGTAATACTCTAAAACCTGAATAAGGCACTAAAGCCAGTGCAAAATATACCTGCTAAATCTTGACTGGAACCTCAAATGCGGTCATATTACTCCAGTATTAGCATCTACGCTGGCTTCCTGTTATGGCtaaggctgatttcaaggttttactggtAACTTACAAAGTATTTCATGGACTTGCTAAGATTTGGTCCTGCCCTACATATACTTACTCTACGGTTATAGATGCAGGCCTCATTGTTCCtacaatttctaagcaaacaactGGAGACATGGCTTTTTCCTATAGAGCCTCTTTCTTATGGAATGTTCTGCTGATCCATATGAGAGACGCAgactgtctcaacctttaaattAAAGTTCtgggatactggccttctaggcaaagttgcaaagaaaaatctaTCTCGGACtggccaaataaaataaaatattaagattggCCAacgaacagacactggacagaggaaccatgctccagatactcaactagtctaaagcatgccaattttattgcttctttaatcagaacacagttttcagctgtgctaatgtaattgcaaaagagttttctaatgacaaattagcctttaaaatgatcaattggattagctaacacaacctgccattggaacacaggagtgagagttggtgataatgggcctatgtagatattccattttaaaaaatctCCCGTTTTTAGCTGCAATAGTCacgacattaacaatgtctacacagtatttctgatcaagttattttagtttttagttttctttcaaaaacaaggacatttctaagtgacctcaaacttttgaacgtgtGTGTGGAAGCCACttgaaatgagtggatttggctatttcagccacacctgttgcggacaggtataaaatcgagcacacagccatgcaatctccataggaaaacattggcagtagactggccttactgaagagctcagtgactttcaatgtggcactgtcatatgACGCAACAattcagttcatcaaatttctgccctgctagagctgccccggtcaactaagtGCTGTTGTGAAGTTGGAAGTCTAGGCGCGACAATGGCTCAgcagtgaagtggtaggccacacaagcttacagaacaggaccgccaagtgctgaagcgcataaaaatcgtctgtccttggttgcaacgcACTGCTAAGTTCCAAAAACGTTTGGGAGCTttttgaaatgggtttccatggccgagcagccacataCAAGCCCAAAATCACAATGACAAGtgtctgctggagtggtgtaaagctcgctgccattgggctctggagcagtggtaatgtgttctctggagtgattgtcggctaatggggatcctaataaatcaaattaatcatgcttcaccatctggcagatcGAAGGATgaatttgggtttggcggatgccaggagaacaccacCTGCCCAAATGcaaagtgccaactgtaaagttttgttcgggctaggcccctaagttccagtgaagagatcttaaaacatcATTGGACttttattgttttattctgtgttacagcattcaacccacaaaatgcattttatgttaaaaaaatatattttgtattacgAACTGGCTGGTTCAAGACCTGAATGCTGATaaactgacagctgtggtatatcagactgtataccacaagtatgacaaaacattcatttttactgctctaattacgttggtaaccagtttataatagcaataaggtacctcgggggtttgtaaactcagcaaaaaaaggaacgtccctttttcaggactctgtctgtcaaagataattcataaaaatccaaataacttcacagatcttcattgtaaagggattAAACACTTTtcccccatgcttgttcaatgaaccataaacaattaatgaacatgcacctgtggaacagtcgttaagacactaacagcttacaggcggtaggcaattaaggtcacagttatgaaaacgtaggacactaaagaggcctttctactgactggaaaaacaccaaaataaagatgcccagggtctctgctcatctgcgtgaatgtgccttaggcatgctgcaagaaggcatgaggactgcagatgtggccagggcaataaattgcaatgtccgtactgtgagacgcctaagacagggagacaggcggacagctgatcgtcctcgcagtggcacaccacgtgtaacaacacctgcacaggatcggtacatccaaacatcacacctgcgggacaggtacaagatggcaacaacaactgcccgagttacaccaggaacacacattccctccatcagtgctcagactgttcgcaataggctgagaaaagcaggactgagggcttgtaggcctgttgtaaggcaggtcctcaccagacaccaccggcaacaacatcgcctatgggcacaaacccaccatcgctggaccagacaggactg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1863773 lncRNA upstream 68307 45118452 ~ 45118655 (+) True G1628861
TU1863752 lncRNA upstream 92632 45086882 ~ 45094330 (+) True G1628840
TU1863681 lncRNA upstream 146430 44978898 ~ 45040532 (+) True G1628783
TU1863679 lncRNA upstream 215658 44971092 ~ 44971304 (+) True G1628781
TU1863634 lncRNA upstream 264633 44922098 ~ 44922329 (+) True G1628737
TU1863780 lncRNA downstream 1671 45195912 ~ 45198309 (+) True LOC110497969
TU1863961 lncRNA downstream 17652 45211893 ~ 45212120 (+) True G1629028
TU1863967 lncRNA downstream 22855 45217096 ~ 45220307 (+) True LOC110497971
TU1863983 lncRNA downstream 62659 45256900 ~ 45257116 (+) True G1629047
TU1864007 lncRNA downstream 116635 45310876 ~ 45377620 (+) True G1629069
XM_021574458.2 mRNA upstream 280 45174289 ~ 45186682 (+) False LOC110497969
XM_036954911.1 mRNA upstream 280 45174289 ~ 45186682 (+) False LOC110497969
XM_021574457.2 mRNA upstream 12877 45166900 ~ 45174085 (+) True LOC110497967
XM_036954910.1 mRNA upstream 28992 45151526 ~ 45157970 (+) True LOC110497965
XM_021574456.2 mRNA upstream 39762 45129015 ~ 45147200 (+) True LOC110497966
XM_036954914.1 mRNA downstream 22760 45217001 ~ 45252828 (+) False LOC110497971
XM_036954913.1 mRNA downstream 22762 45217003 ~ 45252828 (+) False LOC110497971
trnaa-ugc-144 mRNA downstream 48662 45242903 ~ 45242978 (+) True trnaa-ugc-144
XM_036954915.1 mRNA downstream 71857 45266098 ~ 45291658 (+) False LOC110497972
XM_036954916.1 mRNA downstream 71857 45266098 ~ 45291658 (+) False LOC110497972
TU1863660 other upstream 133411 45051199 ~ 45053551 (+) True LOC110497964
TU1863586 other upstream 299789 44886871 ~ 44887173 (+) True G1628689
TU1863440 other upstream 300728 44829922 ~ 44886234 (+) True G1628550
TU1863373 other upstream 438037 44683362 ~ 44748925 (+) True G1628486
TU1863375 other upstream 439516 44688382 ~ 44747446 (+) True G1628488
TU1863990 other downstream 104258 45298499 ~ 45301327 (+) False LOC110497977
TU1863991 other downstream 104258 45298499 ~ 45301327 (+) True LOC110497977
TU1864078 other downstream 202590 45396831 ~ 45399822 (+) True G1629134
TU1864149 other downstream 307553 45501794 ~ 45502263 (+) True G1629200
TU1864159 other downstream 321933 45516174 ~ 45516648 (+) True G1629210

Expression Profile