RNA id: TU1864795


Basic Information

Item Value
RNA id TU1864795
length 1593
RNA type TUCP
GC content 0.47
exon number 2
gene id G1629779
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 46013724 ~ 46016639 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGGATCAAACATTTATTTACCCTTGTTAAAAGTTACAATAAAACAATTAGCATCTTTAAACGATAGCAAAATAAAGAGAACCAAAAATATTGGCCAAAACATATTTACAGAGACAAATTGCAGATAAAAAGCTCACATTTTTGTACACGACCCCAACATCTGCATCATAAACTCTGAAATGTGAACACCGCAAGACTCAGAAGCTCAAATGTGTTTTAGCCAGAAAATAACCAGAATGCACGAACGAAGACATTTCCTTTCCCCCTCCTTGAATTTTGTTTTTCTATACAGCACAAAACACTTAATTTGGGGGTAAAACATAGTAATgtagaatatattttttttagatgATGATTTGAAAGGTTTGTGTCCATATAACAGTCATTTCGAGAGAAGGAGGTGGTATGCCCTGCTCCATAACCGTTGTCGATTTTTAAATCCCAAGAGatgagaaagaaaaataaaatgttataggACTGCCACGCGTTTAAAAGTATGCTTCTCCATGAATTGGGAAAATAAGTCAGTATTCCTGATTCATTCTACATCCAATCCAATACCTTCCCCACACGCCAGTCCCAGTGTGTACCATGAGGGGGCGCTGTAAGCCAACACTTTCGTGAGAGGGCCAGTGAGATTCCGTCAGTAGAGAAATGATAAAGGCAGTGAACTGGTGGCTGAATCAGCAAACGTGATATAGCCTTCTTCATTTGTCTTCGTTTGTAGTTTTGTTTATAAGTTTAAGAACGTGGCACGAGTCTCATATATTTATATACTTTAATCTTGGAAAAACAGTTCAAGTAGCTGCGACGAGTCACGGTCACTCTGTCTTGGGCTCGGTCTCAGATGCTGCGGGTGTCGTGACCTCTGCGGGGGCTGCGGCCTCCTCGGTAGGGGCTTCCTCTGTGGGAGGGGCTTCCTCTGTGGGAGCGGCCTCTGCTGCTGCAGCCTCACCCCCTGGGGCCGGGGTGGCCTCCTTGGCCTCTGCCACAGGCTCGGCGGCTGACGTCTCCTTTGCTGCGTGGCCATTCTCCTCTGGCTTGTCCTCCGCCGTGGGGGAGGCGGCCTCCTCCTCGCTGCTCTTCTTGGTCTTCTTGAGCGAGATGCCCTTGAACTTGAAGGAGTTCTTCAGGGagaacttcttcttcttcttggcaTCCTTGGCGGCCTCTCCGTCGAccttggccacctctccttcggCAGCAGGGGCAGCCTCGATGGAGTCTGTCTCGCCCTCTTTGGCTGGCTCGGCTGTGCCATTCCCGTCTACGGGAGCTGTGTCCCCATCGGGCTTGGCAGAGACATCTCCATTGGTTTTAACATGGCCATTCTCCTGTCCATTAGTTTTAGCGACAGCTGGGTCGTCGACGGCTTTTCCATCAACAGCTACTCCACCCTTGGAAAACTGAGCTCCCATCTTTTATGCTTCCTAAACAAAAAGAAAATCTAAAAGAAAAACCGAGACGATTTACGGTTTTAAATCCAGCCAGAGATAGGTAGATCTTGCCAGATTTTGAAATCCGTGTTGATCCCTTTTACGTTTGGGAAGCAACAAAAGTTTCCCCACTCTGGTCTACTAACCTCACTGCTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1864787 lncRNA upstream 3091 46010404 ~ 46010633 (+) True G1629775
TU1864778 lncRNA upstream 4672 46003755 ~ 46009052 (+) True G1629769
TU1864782 lncRNA upstream 7722 46001550 ~ 46006002 (+) True G1629770
TU1864776 lncRNA upstream 9040 45995823 ~ 46004684 (+) False G1629769
TU1864777 lncRNA upstream 9040 45995823 ~ 46004684 (+) False G1629769
TU1864861 lncRNA downstream 84142 46100781 ~ 46101023 (+) True G1629836
TU1864864 lncRNA downstream 91337 46107976 ~ 46108285 (+) True G1629839
TU1864870 lncRNA downstream 99569 46116208 ~ 46116502 (+) True G1629845
TU1864899 lncRNA downstream 142585 46159224 ~ 46159484 (+) True G1629873
TU1864904 lncRNA downstream 150732 46167371 ~ 46167688 (+) True G1629878
XM_036954931.1 mRNA upstream 29635 45970661 ~ 45984089 (+) True LOC110497998
XM_036954930.1 mRNA upstream 29719 45970660 ~ 45984005 (+) False LOC110497998
XM_021574522.2 mRNA upstream 53399 45929326 ~ 45960325 (+) False LOC110497997
XM_021574521.2 mRNA upstream 95049 45914803 ~ 45918675 (+) True LOC110497996
XM_021574507.2 mRNA upstream 151144 45815973 ~ 45862580 (+) False LOC110497991
XM_036953824.1 mRNA downstream 242989 46259628 ~ 46316653 (+) False LOC110498004
XM_021573120.2 mRNA downstream 441634 46458273 ~ 46461747 (+) False rhd
NM_001124663.1 mRNA downstream 441720 46458359 ~ 46461750 (+) True rhd
XM_036954938.1 mRNA downstream 619318 46635957 ~ 46718146 (+) False LOC110498012
XM_036954936.1 mRNA downstream 619324 46635963 ~ 46718146 (+) False LOC110498012
TU1864159 other upstream 497076 45516174 ~ 45516648 (+) True G1629210
TU1864149 other upstream 511461 45501794 ~ 45502263 (+) True G1629200
TU1864078 other upstream 613902 45396831 ~ 45399822 (+) True G1629134
TU1863990 other upstream 712397 45298499 ~ 45301327 (+) False LOC110497977
TU1863991 other upstream 712397 45298499 ~ 45301327 (+) True LOC110497977
TU1864938 other downstream 208743 46225382 ~ 46225820 (+) True G1629912
TU1864963 other downstream 241280 46257919 ~ 46259648 (+) False LOC110498004
TU1866913 other downstream 1643487 47660126 ~ 47661235 (+) True G1631702
TU1867071 other downstream 1731058 47747697 ~ 47749082 (+) True G1631844
TU1867254 other downstream 2107309 48123948 ~ 48129380 (+) False LOC110498044

Expression Profile