RNA id: TU1864938


Basic Information

Item Value
RNA id TU1864938
length 439
RNA type TUCP
GC content 0.46
exon number 1
gene id G1629912
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 46225382 ~ 46225820 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gctttggggctgtttttctgctaagggaccaggacgactgatcagtgtaaaggaaagaatgaatggggccatgtatcgtgagattttgagtgaaaacttccttccatcagcaagggcattgaagatgaaacatggctgggtctttcagcatgacaatgatcccaaacacaccgcgcgggcaatgaaggagtggcttcgtaagaagcatttcaaggtcatggagtggcctagccagtctccagatctcaaccccatagaaaatctttggagggagttgaaagtctgtgttgcccagcaacagccccaaaacatcactgctctagaggagatctgcatgaaggaatgggccaaaataccagcaacagtgtgtgaaaaccttgtgaagacttacagaaaacatttgacctctgtcattgccaacaaagggtatataagaaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1864926 lncRNA upstream 16379 46208736 ~ 46209003 (+) True G1629900
TU1864921 lncRNA upstream 20469 46199948 ~ 46204913 (+) True G1629895
TU1864908 lncRNA upstream 50550 46174626 ~ 46174832 (+) True G1629882
TU1864904 lncRNA upstream 57694 46167371 ~ 46167688 (+) True G1629878
TU1864899 lncRNA upstream 65898 46159224 ~ 46159484 (+) True G1629873
TU1864940 lncRNA downstream 7911 46233731 ~ 46234066 (+) True G1629914
TU1864941 lncRNA downstream 8511 46234331 ~ 46234969 (+) True G1629915
TU1864942 lncRNA downstream 9159 46234979 ~ 46235238 (+) True G1629916
TU1864945 lncRNA downstream 10642 46236462 ~ 46236681 (+) True G1629919
TU1864948 lncRNA downstream 13698 46239518 ~ 46239768 (+) True G1629922
XM_036954931.1 mRNA upstream 241293 45970661 ~ 45984089 (+) True LOC110497998
XM_036954930.1 mRNA upstream 241377 45970660 ~ 45984005 (+) False LOC110497998
XM_021574522.2 mRNA upstream 265057 45929326 ~ 45960325 (+) False LOC110497997
XM_021574521.2 mRNA upstream 306707 45914803 ~ 45918675 (+) True LOC110497996
XM_021574511.2 mRNA upstream 362802 45854602 ~ 45862580 (+) False LOC110497991
XM_036953824.1 mRNA downstream 33808 46259628 ~ 46316653 (+) False LOC110498004
XM_021573120.2 mRNA downstream 232453 46458273 ~ 46461747 (+) False rhd
NM_001124663.1 mRNA downstream 232539 46458359 ~ 46461750 (+) True rhd
XM_036954938.1 mRNA downstream 410137 46635957 ~ 46718146 (+) False LOC110498012
XM_036954936.1 mRNA downstream 410143 46635963 ~ 46718146 (+) False LOC110498012
TU1864795 other upstream 208743 46013724 ~ 46016639 (+) True G1629779
TU1864159 other upstream 708734 45516174 ~ 45516648 (+) True G1629210
TU1864149 other upstream 723119 45501794 ~ 45502263 (+) True G1629200
TU1864078 other upstream 825560 45396831 ~ 45399822 (+) True G1629134
TU1863990 other upstream 924055 45298499 ~ 45301327 (+) False LOC110497977
TU1864963 other downstream 32099 46257919 ~ 46259648 (+) False LOC110498004
TU1866913 other downstream 1434306 47660126 ~ 47661235 (+) True G1631702
TU1867071 other downstream 1521877 47747697 ~ 47749082 (+) True G1631844
TU1867254 other downstream 1898128 48123948 ~ 48129380 (+) False LOC110498044
TU1867276 other downstream 1898128 48123948 ~ 48129380 (+) False LOC110498044

Expression Profile