RNA id: TU1864948


Basic Information

Item Value
RNA id TU1864948
length 251
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G1629922
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 46239518 ~ 46239768 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTACTAACTATAAAAAAACGGCTACTTTATTTTCAtagtaagtattcaaaccctttgctatgaggctcgaaattgagctcaggtgcatcctgtttccattgatcatccttgagatgtttctacagcttgattggagtccacctgtggtaaattcaattgattggacatgatttggtaaggcacacatctgtctatataaggtcccacagttgacagtagaGTTGACAGACTCTTCCTggtgctggccgccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1864945 lncRNA upstream 2837 46236462 ~ 46236681 (+) True G1629919
TU1864942 lncRNA upstream 4280 46234979 ~ 46235238 (+) True G1629916
TU1864941 lncRNA upstream 4549 46234331 ~ 46234969 (+) True G1629915
TU1864940 lncRNA upstream 5452 46233731 ~ 46234066 (+) True G1629914
TU1864926 lncRNA upstream 30515 46208736 ~ 46209003 (+) True G1629900
TU1864989 lncRNA downstream 57250 46297018 ~ 46297566 (+) True G1629959
TU1864801 lncRNA downstream 75956 46315724 ~ 46318609 (+) True LOC110498004
TU1865013 lncRNA downstream 93502 46333270 ~ 46343210 (+) True G1629981
TU1865062 lncRNA downstream 176981 46416749 ~ 46416977 (+) True G1630025
TU1865064 lncRNA downstream 178822 46418590 ~ 46418819 (+) True G1630027
XM_036954931.1 mRNA upstream 255429 45970661 ~ 45984089 (+) True LOC110497998
XM_036954930.1 mRNA upstream 255513 45970660 ~ 45984005 (+) False LOC110497998
XM_021574522.2 mRNA upstream 279193 45929326 ~ 45960325 (+) False LOC110497997
XM_021574521.2 mRNA upstream 320843 45914803 ~ 45918675 (+) True LOC110497996
XM_021574511.2 mRNA upstream 376938 45854602 ~ 45862580 (+) False LOC110497991
XM_036953824.1 mRNA downstream 19860 46259628 ~ 46316653 (+) False LOC110498004
XM_021573120.2 mRNA downstream 218505 46458273 ~ 46461747 (+) False rhd
NM_001124663.1 mRNA downstream 218591 46458359 ~ 46461750 (+) True rhd
XM_036954938.1 mRNA downstream 396189 46635957 ~ 46718146 (+) False LOC110498012
XM_036954936.1 mRNA downstream 396195 46635963 ~ 46718146 (+) False LOC110498012
TU1864938 other upstream 13698 46225382 ~ 46225820 (+) True G1629912
TU1864795 other upstream 222879 46013724 ~ 46016639 (+) True G1629779
TU1864159 other upstream 722870 45516174 ~ 45516648 (+) True G1629210
TU1864149 other upstream 737255 45501794 ~ 45502263 (+) True G1629200
TU1864078 other upstream 839696 45396831 ~ 45399822 (+) True G1629134
TU1864963 other downstream 18151 46257919 ~ 46259648 (+) False LOC110498004
TU1866913 other downstream 1420358 47660126 ~ 47661235 (+) True G1631702
TU1867071 other downstream 1507929 47747697 ~ 47749082 (+) True G1631844
TU1867254 other downstream 1884180 48123948 ~ 48129380 (+) False LOC110498044
TU1867276 other downstream 1884180 48123948 ~ 48129380 (+) False LOC110498044

Expression Profile