RNA id: TCONS_00052331


Basic Information

Item Value
RNA id TCONS_00052331
length 2532
lncRNA type inter_gene
GC content 0.37
exon number 3
gene id XLOC_025149
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 14251244 ~ 14254765 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTCAATCAGAGCTGGTACGGTTGACCTGAATGTGTTCTGAttaagtttttgtgtgtgttcagtgtggaCAGGCTGCTGTTACTGAAGATGCTTCACTGCTACAGTGTCTCTGATGTCCAGCAGGGGTCAGTGTTTCTGCTCTCCGCTTTGCAGCACAAGCTGGACTTCTCCTGCTGCTCTGCACTGGATCTGACCACAAACACAGACTCTGAGCCTCTACAACTCACAGCTGATGACTGCCGTGTGATATCCAGAGTCATTCAGAGAGCAAAcacagacagaaaaacacagcTGATTCTGAAGGACTGTGAGATTAACACTGCAGGAATGGACCAGCTGTTTACAGTGCTGCATTCAGTGAAACTCTGGTGAAAAACAGCAACAGATTCTTTGCGATattcttgtgtttgttttgagctTATATTTTATCAACAGATGGActttatgctttacaaacagcAGTACTCCAATTCATTACACATACCACTcgaacaaaaataattaataataaagttaGAAAAAGGGCGACAAATCTCACAAGAAAAGTTTGTTTTTGTGGAAAAACGTGTTTAACTTATACAAATTCTTATGATATAGAAAATTTAAAGGCGGGTAGTTATTTGTTGAAGCATGTATTAAGCCATCTTTAACTATCAGCAATGCTTATAATGTTTATAGCTAGCATATGCTGTTTTTCTCCAACAGAGTTAGCCAAACACTTTCTCATGAGCATTTGAGGGTATAGTTAAAAGCTAGCCTACAGCACTATTTCCTGTTAAAAACTAAGCACAGAACCGATTCCAGAGAGAATTGCTATGCGTTTACAATATGCATCTATTTACTGCCTCAGCCCCAGTGTGAACATTCAGAAATGTATCATATTTTGCTGTTGTCTTTCAGCTGTGCTAAACCTCTCCTGCTTCAGTTTCTGGCTCATGTGAGGCGCTGGCAGGCCGAATCTCTTTCTGCAGCTCTGGGTAAAGAGCTGGACCTCAGTCAGACTCCACTGGACCTGCAGGCCTGTAGAGGTTTGGCGCTGATTCTGGAATATTCTGAAGGACTGACTGAACTGGATCTGAGTCAGTGTCATCTCACCGATCACAGCCTGGATCTGCTGCTCCCAAACCTCCACAAAGCACAAAACATCGACTTTAGTGGGAATTACATCACTGATTTAGGGGCCCAGAAAATCCACCGTGTCGTCTCTCACAACAGTAACGTAAAGACAGTGAGGCTCTTCAACAACAGAATTGAATCCAAAGAGCTTTTTAAAGCCCCACAGTTTGAGATCTGGTGATGTCAATAAACTCTTATATATGAAACGTATATCAACAAGCATATTGATAATAAGGTAAAAACTATGTCCCAAAGGTGAATCTAGTCACCAGATAATAAACCACATTCATCTTTTATCATCAGCTTGAGTAATGATCAACAATGGGTTGTTCTATAAAGTGAGTTTAATTAAATGACAGTATCTTTATACTGCTTTATATTGTTTGACATACTCTGTATAGTTTGaatttagtttaatatatttatttaaattttatacaatttattatattcatattcgTGTAGTTCATTCTGTGTTCTGTTTGTTCTAACTGGTAGGTAATTTTAGATTTAGACTGTTTTTAGCGTAAATATTTAACAGATTAAAGATTTCAGCTCAGACAGCCAAAGCAAACAGCTTCAGGTAAAAGAGAgcttatttaaatactttattcaAAGTAAAAATGCTGTTATGTTTACTGGATGTGTATCCTGAATGAGCTACATTCATGTTGTGTTTACAAATGACAACAGTTTTGGATGTAATCCGTTTTCAGGTGACGTGAACCCAACACATCAACTCTGACCTCATTTACATGCACATTCATTTCTGATTAAGGTCCATGATTTCTTTTATTCTGCCTTTATTGGTGATCCACAAACTATTGAAATATTCATGTTTTTCTGTCTGAGTTCTAGTGGTCAATGCTGACAAAATACAAATGACATGATACTCAGGAAATCACTTTTACCTCATTAATGTGACTGACATGTTAGTTATTGTAGGTAAAACTTCTGTTTTTATCACATTATAATATTTTCCTGATTATATTTTTGCtttagttttgtctttttttaactttttaaaaattacttaactgtgtttttgatttgttttatgtaGTAGAGTAGTCTAAAGTGGTCGAGATGCACATTATAGGGAAGAAAAGGGCACTTGCAAGGGCGTCACCAGAGAGTTTTAAACAGAGGTACTGAGGGGATGCTATATATTACTGATGGGGAGCTGGGCGGTACTAATATATATCAGCAAAACAGGTCCTTTctacttgatttttttatttatcataatattttattcatcacAATCTAATCAAGGATTTTCATTTATGTAATTAACCAACGTCAAGCAAGTTGCTGTACCTATGTTGTGTTATTTACATTGTTACATTTGCATTGTGTGCTTCGCtggacatttaattaaaataaaatgtgaaactTGATCTGTTTGAGAGCAT

Function

GO:

id name namespace
GO:0015833 peptide transport biological_process
GO:0045184 establishment of protein localization biological_process
GO:0015031 protein transport biological_process
GO:0042886 amide transport biological_process
GO:0008053 mitochondrial fusion biological_process
GO:0008104 protein localization biological_process

KEGG:

id description
ko00904 Diterpenoid biosynthesis
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052330 lncRNA upstream 2706 14244198 ~ 14248538 (+) False XLOC_025148
TCONS_00049683 lncRNA upstream 3094 14242119 ~ 14248150 (+) False XLOC_025148
TCONS_00052329 lncRNA upstream 48725 14201043 ~ 14202519 (+) True XLOC_025147
TCONS_00052621 lncRNA upstream 177474 14028243 ~ 14073770 (+) True XLOC_025145
TCONS_00052620 lncRNA upstream 773371 13476872 ~ 13477873 (+) True XLOC_025134
TCONS_00052622 lncRNA downstream 22885 14277650 ~ 14287841 (+) True XLOC_025151
TCONS_00052623 lncRNA downstream 975187 15229952 ~ 15231838 (+) True XLOC_025164
TCONS_00052624 lncRNA downstream 1017181 15271946 ~ 15272293 (+) False XLOC_025165
TCONS_00049715 lncRNA downstream 1250419 15505184 ~ 15506157 (+) False XLOC_025169
TCONS_00049716 lncRNA downstream 1250512 15505277 ~ 15506157 (+) True XLOC_025169
TCONS_00049682 mRNA upstream 62222 14157090 ~ 14189022 (+) True XLOC_025146
TCONS_00049681 mRNA upstream 315407 13929860 ~ 13935837 (+) True XLOC_025144
TCONS_00049680 mRNA upstream 350170 13879446 ~ 13901074 (+) True XLOC_025143
TCONS_00049679 mRNA upstream 373994 13862753 ~ 13877250 (+) False XLOC_025143
TCONS_00049678 mRNA upstream 383508 13860815 ~ 13867736 (+) False XLOC_025143
TCONS_00049685 mRNA downstream 4350 14259115 ~ 14260797 (+) True XLOC_025150
TCONS_00049686 mRNA downstream 63037 14317802 ~ 14373164 (+) False XLOC_025152
TCONS_00049687 mRNA downstream 84963 14339728 ~ 14373165 (+) True XLOC_025152
TCONS_00049688 mRNA downstream 133245 14388010 ~ 14452323 (+) False XLOC_025153
TCONS_00049689 mRNA downstream 133245 14388010 ~ 14452325 (+) True XLOC_025153
TCONS_00049684 other upstream 6460 14244666 ~ 14244784 (+) True XLOC_025148
TCONS_00049675 other upstream 393528 13848226 ~ 13857716 (+) False XLOC_025143
TCONS_00049661 other upstream 844706 13406451 ~ 13406538 (+) False XLOC_025131
TCONS_00049660 other upstream 844921 13406226 ~ 13406323 (+) True XLOC_025130
TCONS_00049628 other upstream 2304287 11943549 ~ 11946957 (+) True XLOC_025104
TCONS_00049690 other downstream 144460 14399225 ~ 14399652 (+) True XLOC_025154
TCONS_00049704 other downstream 420004 14674769 ~ 14684603 (+) True XLOC_025161
TCONS_00049719 other downstream 1436538 15691303 ~ 15719823 (+) True XLOC_025174
TCONS_00049721 other downstream 1500958 15755723 ~ 15774178 (+) False XLOC_025176
TCONS_00049736 other downstream 2118247 16373012 ~ 16373127 (+) True XLOC_025188

Expression Profile

//