RNA id: TU1866365



Basic Information


Item Value
RNA id TU1866365
length 434
lncRNA type intronic
GC content 0.48
exon number 1
gene id G1631205
representative True

Chromosome Information


Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 47001174 ~ 47001607 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTTCCCTGCATGCGATTGGCTGTGGTCTTGGGGGCGGCATGCAGCCTGGGAGACCACTGCAGCCTGGGAGACTACTGCAGCCTGGGAGACCACGGCTGCCTGTCAGGCATCGTTCAGGGCTTAAATGGCCCCGCATTGCAATCAACTCAGCCACAGGGCTCCTTGATGAAGTGGTTATCAGGTATCTGAACAAATTAATGGATGATGCGTGATACTTTTGATTATCTCGTGATCTCGACAAAACAACTTTTGTTATGTAGTGATCATGAGATAAATAAGTTGTGATCTTGCCATAAAGAGGGAACTATTTTTTAAAATTCATATGTCCTCTCTAGAGTTCCGTACTGTGGACCTCCTTATGAATTGACTGCATGCTGAGGGAATAAACAACGTGGAGGAACTGTGTGCTGCCTGCTTGAGTGAAAGGGTCTGGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1866267 lncRNA downstream 121142 46870675 ~ 46880032 (-) True G1631121
TU1866263 lncRNA downstream 172708 46827960 ~ 46828466 (-) True G1631118
TU1866209 lncRNA downstream 196361 46803781 ~ 46804813 (-) True LOC110498016
TU1866240 lncRNA downstream 236775 46761293 ~ 46764399 (-) True LOC110498013
TU1866239 lncRNA downstream 251437 46749155 ~ 46749737 (-) True G1631094
TU1866366 lncRNA upstream 4077 47005684 ~ 47005895 (-) True G1631206
TU1866373 lncRNA upstream 40385 47041992 ~ 47042209 (-) True G1631213
TU1866509 lncRNA upstream 309948 47311555 ~ 47313215 (-) True G1631345
TU1866632 lncRNA upstream 351117 47352724 ~ 47377401 (-) True G1631454
TU1866828 lncRNA upstream 520420 47522027 ~ 47522243 (-) True G1631621
XM_021574568.2 mRNA downstream 40431 46955412 ~ 46960743 (-) True LOC110498027
NM_001165248.1 mRNA downstream 54370 46941273 ~ 46946804 (-) True gale
XM_021574567.2 mRNA downstream 60579 46936326 ~ 46940595 (-) True zbtb8a
XM_021574565.2 mRNA downstream 65468 46932146 ~ 46935706 (-) False LOC110498025
XM_021574566.2 mRNA downstream 65468 46932146 ~ 46935706 (-) True LOC110498025
XM_021574570.2 mRNA upstream 388197 47389804 ~ 47394206 (-) False LOC110498030
XM_021574572.2 mRNA upstream 388197 47389804 ~ 47394206 (-) True LOC110498030
XM_021574574.2 mRNA upstream 415783 47417390 ~ 47443318 (-) False LOC110498031
XR_005037761.1 mRNA upstream 420109 47421716 ~ 47443313 (-) False LOC110498031
XM_021574575.2 mRNA upstream 420795 47422402 ~ 47443313 (-) False LOC110498031
TU1866265 other downstream 170524 46830334 ~ 46830650 (-) True G1631120
TU1866141 other downstream 371668 46619207 ~ 46629506 (-) False G1631005
TU1865759 other downstream 995297 46003765 ~ 46005877 (-) False LOC110498001
TU1861812 other downstream 3592065 43408727 ~ 43409109 (-) True G1627068
TU1861008 other downstream 4162740 42759294 ~ 42838434 (-) True G1626324
TU1867475 other upstream 914688 47916295 ~ 47980466 (-) False G1632192
TU1867520 other upstream 966907 47968514 ~ 47970332 (-) True G1632228
TU1867471 other upstream 976099 47977706 ~ 47980466 (-) False G1632192
TU1867476 other upstream 976099 47977706 ~ 47980466 (-) False G1632192
TU1867574 other upstream 1110306 48111913 ~ 48147170 (-) False LOC110498045

Expression Profile