RNA id: TU1866509


Basic Information

Item Value
RNA id TU1866509
length 1499
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id G1631345
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 47311555 ~ 47313215 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcaaatgttcataaatgatcagcatggtcgaataataataaggcagaacagttgaaactggagcagcagcacagccaggtggactggggacagcaaggagtcatcatgtcaggtagtcctggggcatggtcctagggctcaggtcctccgagagagagaaagagagaaggagagaattagagaacgcacacttatcGTGTTGTCTGAGGTTTAACACTGCATGTGTCGGTAAAAATGTTTTAAGATATCCTTGTAATGCATGACGTGCTGCAGGGCTCTAAATGAACCTTTTCATTGGTGGCAATGGTGTCCTGACATAAAATGTAGGAGTACCAGAATTCTTTACTTTTATCGATTGAGATATGGCCTAtataatcacaaacacacacacacacacacacacacacacacacacacacacaactgttcaaaagtttggggtcacttagaaatgtccttgtttttgaaagaaaagcaaactttttgtccattaaaataacatcaatttgatcagaaatacagtgtagacatttgttaatgttgtaaattactattgtagctggaaacggccgatttttttatggaatatctacataggcgtacagaggcccattatcagcaaccatcacgcttgtgttccaatggcatttTGTGTTAgctaaaggctaattgatcattagaaaacccttttgcaattatgttagcacagccaAAAACTgttttctgattaaagaagcaataaaactggccttctttagactagttgagtatcagcatttgtgggtttgattacaggctcaaaatagccagaaacaaagaactttgttaaatagtacccgcaaaacaccagtctcaacgtcaacagtgaagagactggtgttttgcgtgtactatttaatgaagctgccagttgaggacttgtgaggcatctgtttctcaaactagacactctaatgtacttgtcctcatgctcagttgtgcaccggggcctcccactctttctattctgtttagagtcagtttgcgctgttctgtgaagggagtagtacacagcattgcaccagatcttcagtttcttggcaatttctcgcatggaatagccttcattgctcagaacaagaatagactgacgagtttcagaagaaagttctttgtttctggccatttagaGCATGTAATCGatctcacaaatgctgatgctccagacactcaactagtctaaaggacagttttatttATTCTaaccaggacaacagttttcagctatgctaacataattgcaaaagggtttctaatggacaattagccttttaaaattataaacttggattagctaacacaatgtgccattggaacagtgatggttgctgataatgggcctctgtatgcctatgtagatacccataaaaatctgccgtttccagctacaatagtcattttcaacattaaccatgtatttctgattaatttgatgttattttaacagaCAAAAAACATAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1866373 lncRNA downstream 269346 47041992 ~ 47042209 (-) True G1631213
TU1866366 lncRNA downstream 305660 47005684 ~ 47005895 (-) True G1631206
TU1866365 lncRNA downstream 309948 47001174 ~ 47001607 (-) True G1631205
TU1866267 lncRNA downstream 431523 46870675 ~ 46880032 (-) True G1631121
TU1866263 lncRNA downstream 483089 46827960 ~ 46828466 (-) True G1631118
TU1866632 lncRNA upstream 39509 47352724 ~ 47377401 (-) True G1631454
TU1866828 lncRNA upstream 208812 47522027 ~ 47522243 (-) True G1631621
TU1866835 lncRNA upstream 223652 47536867 ~ 47537092 (-) True G1631628
TU1866845 lncRNA upstream 243487 47556702 ~ 47556969 (-) True G1631638
TU1866936 lncRNA upstream 314830 47628045 ~ 47628728 (-) True G1631721
XM_036954948.1 mRNA downstream 138756 46982690 ~ 47172799 (-) False LOC110498370
XM_036954950.1 mRNA downstream 138756 46985439 ~ 47172799 (-) True LOC110498370
XM_036954949.1 mRNA downstream 138757 46982690 ~ 47172798 (-) False LOC110498370
XM_036954952.1 mRNA downstream 138757 46985439 ~ 47172798 (-) False LOC110498370
XM_036954951.1 mRNA downstream 138758 46982690 ~ 47172797 (-) False LOC110498370
XM_021574570.2 mRNA upstream 76589 47389804 ~ 47394206 (-) False LOC110498030
XM_021574572.2 mRNA upstream 76589 47389804 ~ 47394206 (-) True LOC110498030
XM_021574574.2 mRNA upstream 104175 47417390 ~ 47443318 (-) False LOC110498031
XR_005037761.1 mRNA upstream 108501 47421716 ~ 47443313 (-) False LOC110498031
XM_021574575.2 mRNA upstream 109187 47422402 ~ 47443313 (-) False LOC110498031
TU1866265 other downstream 480905 46830334 ~ 46830650 (-) True G1631120
TU1866141 other downstream 682049 46619207 ~ 46629506 (-) False G1631005
TU1865759 other downstream 1305678 46003765 ~ 46005877 (-) False LOC110498001
TU1861812 other downstream 3902446 43408727 ~ 43409109 (-) True G1627068
TU1861008 other downstream 4473121 42759294 ~ 42838434 (-) True G1626324
TU1867475 other upstream 603080 47916295 ~ 47980466 (-) False G1632192
TU1867520 other upstream 655299 47968514 ~ 47970332 (-) True G1632228
TU1867471 other upstream 664491 47977706 ~ 47980466 (-) False G1632192
TU1867476 other upstream 664491 47977706 ~ 47980466 (-) False G1632192
TU1867574 other upstream 798698 48111913 ~ 48147170 (-) False LOC110498045

Expression Profile