RNA id: TU1866970


Basic Information

Item Value
RNA id TU1866970
length 602
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G1631752
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 47677342 ~ 47677943 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAATGCACCACTGAACTCCTATGTCGCcaagaacaacaacacagttCACGCTTTAGAAATGATTATACGTGTGAATACATTTGTAAGATCTTGCAGTTTTTCTCTGTTATGTTTTACATGTCAAATTTGGGGGATTAAGTTTTTTTGGTGGAGACTTAGTCGATGCTAATATTCAAATAGTTACAAATGTATCCAGTGTAGGACCTGATCATACAGTTTGTATTCATTACCCACAAGAGGGTAAATAATCAAGATGTATTCTACAAGACTAAAAAGATCACCAACTACTAGAATTTTTGACCTGCCATTTTCAAACTATCTACAGTTTCCtctctcaggtgcatcctgagctcaaaccaagccatgaggttgaaggaattgtccatagagctccaagacaggattgtgtcgaagcacagatctggggaagggtaccaaaacagttctgcagcatttaaaggtccccaagaaatcagtggcctccatcattctgaaatggaagaagtttggaaccacaaataTTCCtcatagagctggccacctgcctaaactaagcaatcgggggagaaggaccttggtcagggaggttgccaagaaccca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1866927 lncRNA upstream 46427 47630686 ~ 47630915 (+) True G1631712
TU1866926 lncRNA upstream 47131 47630005 ~ 47630211 (+) True G1631711
TU1866925 lncRNA upstream 47736 47629359 ~ 47629606 (+) True G1631710
TU1866924 lncRNA upstream 48592 47627900 ~ 47628750 (+) True G1631709
TU1866923 lncRNA upstream 50924 47626041 ~ 47626418 (+) True G1631708
TU1867003 lncRNA downstream 19968 47697911 ~ 47698117 (+) True G1631785
TU1867004 lncRNA downstream 20209 47698152 ~ 47698366 (+) True G1631786
TU1867005 lncRNA downstream 21677 47699620 ~ 47699822 (+) True G1631787
TU1867013 lncRNA downstream 26568 47704511 ~ 47704767 (+) True G1631795
TU1867014 lncRNA downstream 27312 47705255 ~ 47705556 (+) True G1631796
XM_036954954.1 mRNA upstream 157688 47514824 ~ 47519654 (+) False LOC110498032
XM_021574576.2 mRNA upstream 157688 47514829 ~ 47519654 (+) True LOC110498032
XR_002469756.2 mRNA upstream 339123 47280667 ~ 47338219 (+) False LOC110498029
XM_036953826.1 mRNA downstream 86441 47764384 ~ 47765501 (+) True LOC118941362
XM_036954967.1 mRNA downstream 183920 47861863 ~ 47937951 (+) False LOC110498042
XM_036954968.1 mRNA downstream 183922 47861865 ~ 47918465 (+) False LOC110498042
XM_036954969.1 mRNA downstream 246785 47924728 ~ 47937951 (+) False LOC110498042
XM_036954970.1 mRNA downstream 247434 47925377 ~ 47937951 (+) True LOC110498042
TU1866913 other upstream 16107 47660126 ~ 47661235 (+) True G1631702
TU1864963 other upstream 1417694 46257919 ~ 46259648 (+) False LOC110498004
TU1864938 other upstream 1451522 46225382 ~ 46225820 (+) True G1629912
TU1864795 other upstream 1660703 46013724 ~ 46016639 (+) True G1629779
TU1864159 other upstream 2160694 45516174 ~ 45516648 (+) True G1629210
TU1867071 other downstream 69754 47747697 ~ 47749082 (+) True G1631844
TU1867254 other downstream 446005 48123948 ~ 48129380 (+) False LOC110498044
TU1867276 other downstream 446005 48123948 ~ 48129380 (+) False LOC110498044
TU1867715 other downstream 900835 48578778 ~ 48579656 (+) False LOC110498372
TU1867942 other downstream 911682 48589625 ~ 48678155 (+) True LOC110498046

Expression Profile