RNA id: TU1867014


Basic Information

Item Value
RNA id TU1867014
length 302
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G1631796
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 47705255 ~ 47705556 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aagtagcacactcttggcattctctcaaccagcttcatgaggtagtcatctggaatgcatttcaattaacaggtgtgccttgttaaaagttcatttgtggaatttaagGTCTTCATGTGAAATATTTCAATGCATTTGTGGGAAAGTGATTTCATTACATAGCAAAGTCAAGCATATTTCCTTTAAATACAAGTCAACACTATCCATCCCTTGATCATCTTTTCCAGAGAGGAGTCAAGTACATTGGTGGTAAACTTTCTTTTCAAAGAGCATGTCATTCATGAATGACATTTTCCATAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1867013 lncRNA upstream 488 47704511 ~ 47704767 (+) True G1631795
TU1867005 lncRNA upstream 5433 47699620 ~ 47699822 (+) True G1631787
TU1867004 lncRNA upstream 6889 47698152 ~ 47698366 (+) True G1631786
TU1867003 lncRNA upstream 7138 47697911 ~ 47698117 (+) True G1631785
TU1866970 lncRNA upstream 27312 47677342 ~ 47677943 (+) True G1631752
TU1867063 lncRNA downstream 38718 47744274 ~ 47744519 (+) True G1631837
TU1867064 lncRNA downstream 39006 47744562 ~ 47744791 (+) True G1631838
TU1867069 lncRNA downstream 44328 47749884 ~ 47750571 (+) True G1631843
TU1867066 lncRNA downstream 65883 47771439 ~ 47771868 (+) True G1631840
TU1867085 lncRNA downstream 67145 47772701 ~ 47772971 (+) True G1631857
XM_036954954.1 mRNA upstream 185601 47514824 ~ 47519654 (+) False LOC110498032
XM_021574576.2 mRNA upstream 185601 47514829 ~ 47519654 (+) True LOC110498032
XR_002469756.2 mRNA upstream 367036 47280667 ~ 47338219 (+) False LOC110498029
XM_036953826.1 mRNA downstream 58828 47764384 ~ 47765501 (+) True LOC118941362
XM_036954967.1 mRNA downstream 156307 47861863 ~ 47937951 (+) False LOC110498042
XM_036954968.1 mRNA downstream 156309 47861865 ~ 47918465 (+) False LOC110498042
XM_036954969.1 mRNA downstream 219172 47924728 ~ 47937951 (+) False LOC110498042
XM_036954970.1 mRNA downstream 219821 47925377 ~ 47937951 (+) True LOC110498042
TU1866913 other upstream 44020 47660126 ~ 47661235 (+) True G1631702
TU1864963 other upstream 1445607 46257919 ~ 46259648 (+) False LOC110498004
TU1864938 other upstream 1479435 46225382 ~ 46225820 (+) True G1629912
TU1864795 other upstream 1688616 46013724 ~ 46016639 (+) True G1629779
TU1864159 other upstream 2188607 45516174 ~ 45516648 (+) True G1629210
TU1867071 other downstream 42141 47747697 ~ 47749082 (+) True G1631844
TU1867254 other downstream 418392 48123948 ~ 48129380 (+) False LOC110498044
TU1867276 other downstream 418392 48123948 ~ 48129380 (+) False LOC110498044
TU1867715 other downstream 873222 48578778 ~ 48579656 (+) False LOC110498372
TU1867942 other downstream 884069 48589625 ~ 48678155 (+) True LOC110498046

Expression Profile