RNA id: TU1867764



Basic Information


Item Value
RNA id TU1867764
length 212
lncRNA type intronic
GC content 0.48
exon number 1
gene id G1632444
representative True

Chromosome Information


Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 48319018 ~ 48319229 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AATTgtgagcgttgtcagattgtcagatcgtaaattcagagtgtttcacTCTCGGAGTGTTCAGAGCGCatactggacgctctggccgatgagtatggttgatccgagcgttctgacctcacaaccgcagtcaagcacccaagctaacttcctaaagttagctagcttgctagctacttccagacataaatgagagaacaccACACTCTGGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1867757 lncRNA upstream 6604 48312203 ~ 48312414 (+) True G1632437
TU1867756 lncRNA upstream 6822 48311968 ~ 48312196 (+) True G1632436
TU1867748 lncRNA upstream 18240 48300546 ~ 48300778 (+) True G1632429
TU1867734 lncRNA upstream 45374 48273397 ~ 48273644 (+) True G1632415
TU1867727 lncRNA upstream 54204 48264591 ~ 48264814 (+) True G1632408
TU1867765 lncRNA downstream 235 48319464 ~ 48319681 (+) True G1632445
TU1867778 lncRNA downstream 15767 48334996 ~ 48335233 (+) True G1632458
TU1867786 lncRNA downstream 21016 48340245 ~ 48340532 (+) True G1632461
TU1867789 lncRNA downstream 23344 48342573 ~ 48342802 (+) True G1632463
TU1867801 lncRNA downstream 53513 48372742 ~ 48372984 (+) True G1632474
XM_036954973.1 mRNA upstream 152274 48160753 ~ 48166744 (+) True LOC118941486
XR_002469764.2 mRNA upstream 189638 48124007 ~ 48129380 (+) False LOC110498044
XM_036954971.1 mRNA upstream 192400 48122225 ~ 48126618 (+) False LOC110498044
XM_036954959.1 mRNA upstream 207371 48035486 ~ 48111647 (+) False LOC110498040
XR_002469766.2 mRNA downstream 242337 48561566 ~ 48564328 (+) True LOC110498048
XM_036954983.1 mRNA downstream 269715 48588944 ~ 48677474 (+) False LOC110498046
XM_036954978.1 mRNA downstream 270003 48589232 ~ 48677474 (+) False LOC110498046
XM_036954979.1 mRNA downstream 270003 48589232 ~ 48677474 (+) False LOC110498046
XM_021574607.2 mRNA downstream 270421 48589650 ~ 48677474 (+) False LOC110498046
TU1867254 other upstream 189638 48123948 ~ 48129380 (+) False LOC110498044
TU1867276 other upstream 189638 48123948 ~ 48129380 (+) False LOC110498044
TU1867071 other upstream 569936 47747697 ~ 47749082 (+) True G1631844
TU1866913 other upstream 657783 47660126 ~ 47661235 (+) True G1631702
TU1864963 other upstream 2059370 46257919 ~ 46259648 (+) False LOC110498004
TU1867715 other downstream 259549 48578778 ~ 48579656 (+) False LOC110498372
TU1867942 other downstream 270396 48589625 ~ 48678155 (+) True LOC110498046
TU1868002 other downstream 379828 48699057 ~ 48700568 (+) True G1632650
TU1868247 other downstream 844725 49163954 ~ 49167553 (+) False zgc:193593
TU1868248 other downstream 844725 49163954 ~ 49178402 (+) True zgc:193593

Expression Profile