RNA id: TU1867876


Basic Information

Item Value
RNA id TU1867876
length 226
lncRNA type intronic
GC content 0.42
exon number 1
gene id G1632537
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 48478367 ~ 48478592 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGCAAGCGGGTGGGCAGCCGCGGAGGCATGACGAAAACAAAAGCCTGTGCCACCACAGAGGATATATGAACAACAAGACAGTCATTTATCACTGTTTATCACCACAGAACCTTCTTATTCATCTGGACAATAAACCATAACACTCAACATGTTATGCTTCAGTAAACAATAGATCACAATAATACATATACTGGTGAAAGAACCACAGTAGTAGCTGGTTTCATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1867875 lncRNA upstream 1403 48476731 ~ 48476964 (+) True G1632536
TU1867870 lncRNA upstream 6996 48471080 ~ 48471371 (+) True G1632531
TU1867869 lncRNA upstream 7417 48470740 ~ 48470950 (+) True G1632530
TU1867862 lncRNA upstream 12519 48465615 ~ 48465848 (+) True G1632523
TU1867860 lncRNA upstream 14001 48464139 ~ 48464366 (+) True G1632521
TU1867890 lncRNA downstream 18812 48497404 ~ 48497622 (+) True G1632550
TU1867892 lncRNA downstream 21963 48500555 ~ 48500800 (+) True G1632552
TU1867930 lncRNA downstream 83374 48561966 ~ 48562204 (+) True G1632589
TU1867933 lncRNA downstream 90098 48568690 ~ 48568913 (+) True G1632592
TU1867935 lncRNA downstream 93578 48572170 ~ 48572433 (+) True G1632594
XM_036954973.1 mRNA upstream 311623 48160753 ~ 48166744 (+) True LOC118941486
XR_002469764.2 mRNA upstream 348987 48124007 ~ 48129380 (+) False LOC110498044
XM_036954971.1 mRNA upstream 351749 48122225 ~ 48126618 (+) False LOC110498044
XM_036954959.1 mRNA upstream 366720 48035486 ~ 48111647 (+) False LOC110498040
XR_002469766.2 mRNA downstream 82974 48561566 ~ 48564328 (+) True LOC110498048
XM_036954983.1 mRNA downstream 110352 48588944 ~ 48677474 (+) False LOC110498046
XM_036954978.1 mRNA downstream 110640 48589232 ~ 48677474 (+) False LOC110498046
XM_036954979.1 mRNA downstream 110640 48589232 ~ 48677474 (+) False LOC110498046
XM_021574607.2 mRNA downstream 111058 48589650 ~ 48677474 (+) False LOC110498046
TU1867254 other upstream 348987 48123948 ~ 48129380 (+) False LOC110498044
TU1867276 other upstream 348987 48123948 ~ 48129380 (+) False LOC110498044
TU1867071 other upstream 729285 47747697 ~ 47749082 (+) True G1631844
TU1866913 other upstream 817132 47660126 ~ 47661235 (+) True G1631702
TU1864963 other upstream 2218719 46257919 ~ 46259648 (+) False LOC110498004
TU1867715 other downstream 100186 48578778 ~ 48579656 (+) False LOC110498372
TU1867942 other downstream 111033 48589625 ~ 48678155 (+) True LOC110498046
TU1868002 other downstream 220465 48699057 ~ 48700568 (+) True G1632650
TU1868247 other downstream 685362 49163954 ~ 49167553 (+) False zgc:193593
TU1868248 other downstream 685362 49163954 ~ 49178402 (+) True zgc:193593

Expression Profile