RNA id: TU1867890


Basic Information

Item Value
RNA id TU1867890
length 219
lncRNA type intronic
GC content 0.51
exon number 1
gene id G1632550
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 48497404 ~ 48497622 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GtttgagagagcagagggagggggagagggatagcAAACCAGCCGTTGTGCTGTGCCTGATTGACAGAAATGTTGATTGTGTTCTGGAGCACCTGTGGGACTTCCTTCACCCCCCAACCCCCAACACGTTCCTAGCTCCAGTACAAATACAGAATTACTCCTGTGGTGAGAATACTCCAACAGTCACGTCTTTCAAGATACCCTCCACATGCTCTAGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1867876 lncRNA upstream 18812 48478367 ~ 48478592 (+) True G1632537
TU1867875 lncRNA upstream 20440 48476731 ~ 48476964 (+) True G1632536
TU1867870 lncRNA upstream 26033 48471080 ~ 48471371 (+) True G1632531
TU1867869 lncRNA upstream 26454 48470740 ~ 48470950 (+) True G1632530
TU1867862 lncRNA upstream 31556 48465615 ~ 48465848 (+) True G1632523
TU1867892 lncRNA downstream 2933 48500555 ~ 48500800 (+) True G1632552
TU1867930 lncRNA downstream 64344 48561966 ~ 48562204 (+) True G1632589
TU1867933 lncRNA downstream 71068 48568690 ~ 48568913 (+) True G1632592
TU1867935 lncRNA downstream 74548 48572170 ~ 48572433 (+) True G1632594
TU1867936 lncRNA downstream 74877 48572499 ~ 48572813 (+) True G1632595
XM_036954973.1 mRNA upstream 330660 48160753 ~ 48166744 (+) True LOC118941486
XR_002469764.2 mRNA upstream 368024 48124007 ~ 48129380 (+) False LOC110498044
XM_036954971.1 mRNA upstream 370786 48122225 ~ 48126618 (+) False LOC110498044
XM_036954959.1 mRNA upstream 385757 48035486 ~ 48111647 (+) False LOC110498040
XR_002469766.2 mRNA downstream 63944 48561566 ~ 48564328 (+) True LOC110498048
XM_036954983.1 mRNA downstream 91322 48588944 ~ 48677474 (+) False LOC110498046
XM_036954978.1 mRNA downstream 91610 48589232 ~ 48677474 (+) False LOC110498046
XM_036954979.1 mRNA downstream 91610 48589232 ~ 48677474 (+) False LOC110498046
XM_021574607.2 mRNA downstream 92028 48589650 ~ 48677474 (+) False LOC110498046
TU1867254 other upstream 368024 48123948 ~ 48129380 (+) False LOC110498044
TU1867276 other upstream 368024 48123948 ~ 48129380 (+) False LOC110498044
TU1867071 other upstream 748322 47747697 ~ 47749082 (+) True G1631844
TU1866913 other upstream 836169 47660126 ~ 47661235 (+) True G1631702
TU1864963 other upstream 2237756 46257919 ~ 46259648 (+) False LOC110498004
TU1867715 other downstream 81156 48578778 ~ 48579656 (+) False LOC110498372
TU1867942 other downstream 92003 48589625 ~ 48678155 (+) True LOC110498046
TU1868002 other downstream 201435 48699057 ~ 48700568 (+) True G1632650
TU1868247 other downstream 666332 49163954 ~ 49167553 (+) False zgc:193593
TU1868248 other downstream 666332 49163954 ~ 49178402 (+) True zgc:193593

Expression Profile